PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

Dof

Protein Properties

Length: 206aa MW: 21835.2 Da PI: 8.5949

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_00452	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	127.6	3.7e-40	17	77	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++lkcprCdstntkfCyynny+lsqPr+fCk+CrryWtkGGalrn+PvGgg+rk k+s C.cajan_00452 17 EQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKTTKRS 77 57899***************************************************98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-25	14	66	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.0E-33	19	75	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.422	21	75	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	23	59	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MQDATSFQGL KAAQFPEQEQ LKCPRCDSTN TKFCYYNNYN LSQPRHFCKN CRRYWTKGGA 60 LRNIPVGGGS RKTTKRSSTS KRSSALPSPA VSDPDPTRIH TVPVDQGVLT IGGGSFSSLL 120 ASSGHFGTIL EGLNPSGSGP KMAEFGEGVG SDPGLNSGSG TDPGLQVQSN ASSESFLGMQ 180 NADSGCWNGS HGWSDLAMYT PAPSFR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_00452

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_029128914.1	1e-152	dof zinc finger protein DOF3.1-like
Swissprot	O82155	3e-43	DOF17_ARATH; Dof zinc finger protein DOF1.7
TrEMBL	A0A0K8K5T9	1e-150	A0A0K8K5T9_CAJCA; Dof protein
STRING	GLYMA07G01461.1	1e-107	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6181	33	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	4e-35	DOF zinc finger protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Malviya N, et al. Genome wide in silico characterization of Dof gene families of pigeonpea (Cajanus cajan (L) Millsp.). Mol. Biol. Rep., 2015. 42(2): p. 535-52 [PMID:25344821]