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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_00414 | ||||||||
Common Name | KK1_000427 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | bHLH | ||||||||
Protein Properties | Length: 243aa MW: 27196.6 Da PI: 6.9606 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.5 | 0.00027 | 182 | 220 | 12 | 55 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq C.cajan_00414 182 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 220 6678889999999999998.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.719 | 170 | 219 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.23E-10 | 180 | 231 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.8E-7 | 180 | 226 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.57E-6 | 180 | 224 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MMAGNPNWWS MHPPPLIPPQ YVLPPSSIPF NSLTENPEPP QSWSQLLSTG LPGEEEKLGF 60 SHFQPKNWDV QFLNTASRVP ILDVIKQEVS QRGNLYDHGL EEFQASGPAG SSWSHMVPVS 120 SPGSCVTSLS SNNILDFTYN KSDHRNNLLQ DQISECNSTA TVAVWKKARV QPSSSQAPLK 180 VRKEKLGDRI TALHQLVSPF GKTDTASVLL EAIGYIRFLQ GQIEVMFPRF SDRNPQQHHR 240 DQQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_00414 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020227257.1 | 1e-165 | transcription factor bHLH68 | ||||
TrEMBL | A0A151SHI9 | 1e-180 | A0A151SHI9_CAJCA; Transcription factor bHLH68 | ||||
STRING | GLYMA15G02020.1 | 1e-122 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1223 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29100.1 | 1e-27 | bHLH family protein |