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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv_030250_atid.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | HSF | ||||||||
Protein Properties | Length: 241aa MW: 26953.9 Da PI: 9.9409 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 61.7 | 1.8e-19 | 2 | 66 | 32 | 103 |
-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 32 deeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkkse 103 d + +a +vLpk+Fkh nfaSFvRQL+ YgF+k++ ++ eF+h++F g+ +ll+ i rk+++ Bv_030250_atid.t1 2 DANVLAAEVLPKFFKHGNFASFVRQLHFYGFSKTTLMNGG-------SEFRHPNFIYGRMDLLHLISRKSTD 66 5677999*******************************99.......9*********************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 2.8E-6 | 1 | 63 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 1.8E-16 | 2 | 57 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.3E-15 | 2 | 63 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 3.4E-15 | 2 | 63 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 7.8E-7 | 10 | 22 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.8E-7 | 23 | 35 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
CDD | cd14686 | 0.00985 | 61 | 104 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
KDANVLAAEV LPKFFKHGNF ASFVRQLHFY GFSKTTLMNG GSEFRHPNFI YGRMDLLHLI 60 SRKSTDTITK QRSQIDDLQQ QVMYLRQQNE QLLMEHRRIM SLVSSKDPAA LNSICPTLPT 120 QIPYRTDGVI PDRTSSGGIP VPNMASREGS VASSSPILKP VLKAVCFNGT NNLLHMPPSP 180 SMHGISNLPG SRIPTAMVYH NPEYTMNNFQ QIMQYPDMSS NHAHVEIPAA VSAFKMNPRS 240 I |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010668784.1 | 1e-179 | PREDICTED: heat stress transcription factor A-1b-like, partial | ||||
TrEMBL | A0A0J8AXL9 | 1e-179 | A0A0J8AXL9_BETVU; Uncharacterized protein (Fragment) | ||||
STRING | XP_010668784.1 | 1e-179 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67970.1 | 3e-12 | heat shock transcription factor A8 |