PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv_010830_jrft.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family CO-like
Protein Properties Length: 429aa    MW: 48855.7 Da    PI: 5.788
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv_010830_jrft.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.21.4e-071659340
           zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                       +r C+ + +k+++++C  ++ +lC++C ++ H+       H++v
  Bv_010830_jrft.t1 16 ARACDCCIRKRARWYCPADDAFLCQTCDSSVHSAnqlarrHERV 59
                       578*****************************657788888876 PP
2CCT68.42e-23375418144
                CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                        Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  Bv_010830_jrft.t1 375 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRS 418
                        9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.5E-91461IPR000315B-box-type zinc finger
PROSITE profilePS5011910.7361461IPR000315B-box-type zinc finger
CDDcd000214.26E-81761No hitNo description
PfamPF006437.8E-61759IPR000315B-box-type zinc finger
PROSITE profilePS5101716.083375417IPR010402CCT domain
PfamPF062035.7E-18375417IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MISDKKIANA VSGKTARACD CCIRKRARWY CPADDAFLCQ TCDSSVHSAN QLARRHERVR  60
LKTASLRRSD DHQQTDIPSW HRGLTRKPRT PRHGKHQSKT EERNPLHVIV PELGMEDSSS  120
SQDGETEEEH LLYRVPIYDP FIADDIRPME LEGGLDTAKC MFNNSKSSPD GYLPSDIDLE  180
EFAADVETLL GKGLDDESYG IEELGLLGCS INNNEIHDIE KIIKEEGELG DEGEMIRRCE  240
IEADSNSLVI KEPFEFSFDY DDHYFGTMCE DDVEDQKKVI MIEQSMGNEL SKIEGDDETE  300
NKRRKILLRL DYEAISDAWA SHGSPWINGQ RPQINSDDCW PHCMATCGLE GRHPIFGDHQ  360
MGGMGGNRGI GDGGREARVS RYREKRRTRL FSKKIRYEVR KLNAEKRPRM KGRFVKRSSF  420
TAATTAFSK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1385401RRTRLFSKKIRYEVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010667660.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A0J8DWJ00.0A0A0J8DWJ0_BETVU; Uncharacterized protein
STRINGXP_010667660.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.15e-97B-box type zinc finger protein with CCT domain