PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv_007840_zutx.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C2H2
Protein Properties Length: 414aa    MW: 46178.8 Da    PI: 8.3682
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv_007840_zutx.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.23.5e-07244266123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        + C+ Cgk F+r  nL+ H+r H
  Bv_007840_zutx.t1 244 HYCQVCGKGFKRDANLRMHMRAH 266
                        68*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.6E-6242269No hitNo description
PROSITE profilePS5015712.653244271IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-6244270IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0034244266IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280246266IPR007087Zinc finger, C2H2
SMARTSM0035598297330IPR015880Zinc finger, C2H2-like
SMARTSM0035536335357IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MDPGTSSCFP STAEPEGMIE PPSQLYHDVM EASFGGGVTG SEAQLRSIIC SLSILKQKVL  60
EVESLLSILM SQQSHHNAQP STTLSTSSIP YASLGTLIQE VVVTASSMMF NSQQMNISSS  120
QTGHTSNSSS HPQAEQQRPP DDGLSQFIGT VVGKNNANQL YLDGESFYNW YNNDISTGNN  180
NYINTRADDS SRTTTTIIPT VKAERSNNAK AQTSNKMALN RKLLSEAYDL VEPDAEDLLA  240
KYTHYCQVCG KGFKRDANLR MHMRAHGDEY KSSAALSNPL KKDTVDQNNA TKPPRKYSCP  300
HQGCRWNKNH VKFQPLKSII CVKNHYKRSH CPKMYVCKRC TRKEFSVLSD LRTHEKHCGD  360
RRWQCSCGTN FSRKDKLMGH VALFVGHSPV ISPFSNGDNK LDNHGELQIQ FEDR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010667294.10.0PREDICTED: zinc finger protein STOP1 homolog
TrEMBLA0A0J8B2Y20.0A0A0J8B2Y2_BETVU; Uncharacterized protein
STRINGXP_010667294.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-96C2H2 family protein