PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Binding Motif |

Regulation |

Basic Information? help Back to Top

TF ID

Bv_007840_zutx.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

C2H2

Protein Properties

Length: 414aa MW: 46178.8 Da PI: 8.3682

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv_007840_zutx.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	22.2	3.5e-07	244	266	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cgk F+r nL+ H+r H Bv_007840_zutx.t1 244 HYCQVCGKGFKRDANLRMHMRAH 266 68*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.6E-6	242	269	No hit	No description
PROSITE profile	PS50157	12.653	244	271	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	1.5E-6	244	270	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.0034	244	266	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	246	266	IPR007087	Zinc finger, C2H2
SMART	SM00355	98	297	330	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	36	335	357	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010200	Biological Process	response to chitin
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence Send to blast
MDPGTSSCFP STAEPEGMIE PPSQLYHDVM EASFGGGVTG SEAQLRSIIC SLSILKQKVL 60 EVESLLSILM SQQSHHNAQP STTLSTSSIP YASLGTLIQE VVVTASSMMF NSQQMNISSS 120 QTGHTSNSSS HPQAEQQRPP DDGLSQFIGT VVGKNNANQL YLDGESFYNW YNNDISTGNN 180 NYINTRADDS SRTTTTIIPT VKAERSNNAK AQTSNKMALN RKLLSEAYDL VEPDAEDLLA 240 KYTHYCQVCG KGFKRDANLR MHMRAHGDEY KSSAALSNPL KKDTVDQNNA TKPPRKYSCP 300 HQGCRWNKNH VKFQPLKSII CVKNHYKRSH CPKMYVCKRC TRKEFSVLSD LRTHEKHCGD 360 RRWQCSCGTN FSRKDKLMGH VALFVGHSPV ISPFSNGDNK LDNHGELQIQ FEDR

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence Send to blast

MDPGTSSCFP STAEPEGMIE PPSQLYHDVM EASFGGGVTG SEAQLRSIIC SLSILKQKVL  60
EVESLLSILM SQQSHHNAQP STTLSTSSIP YASLGTLIQE VVVTASSMMF NSQQMNISSS  120
QTGHTSNSSS HPQAEQQRPP DDGLSQFIGT VVGKNNANQL YLDGESFYNW YNNDISTGNN  180
NYINTRADDS SRTTTTIIPT VKAERSNNAK AQTSNKMALN RKLLSEAYDL VEPDAEDLLA  240
KYTHYCQVCG KGFKRDANLR MHMRAHGDEY KSSAALSNPL KKDTVDQNNA TKPPRKYSCP  300
HQGCRWNKNH VKFQPLKSII CVKNHYKRSH CPKMYVCKRC TRKEFSVLSD LRTHEKHCGD  360
RRWQCSCGTN FSRKDKLMGH VALFVGHSPV ISPFSNGDNK LDNHGELQIQ FEDR

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00522	DAP	Transfer from AT5G22890	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010667294.1	0.0	PREDICTED: zinc finger protein STOP1 homolog
TrEMBL	A0A0J8B2Y2	0.0	A0A0J8B2Y2_BETVU; Uncharacterized protein
STRING	XP_010667294.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22890.1	1e-96	C2H2 family protein