PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv_007620_enci.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family GATA
Protein Properties Length: 319aa    MW: 35819.9 Da    PI: 8.9925
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv_007620_enci.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.22.6e-19166199134
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                        Cs C+tt+TplWR+gp+g+k+LCnaCG+++rk +
  Bv_007620_enci.t1 166 CSDCHTTTTPLWRSGPQGPKSLCNACGIRQRKAR 199
                        *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.52E-13157200No hitNo description
SMARTSM004012.5E-19160211IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.967164196IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.8E-16164199IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.14E-12165193No hitNo description
PfamPF003204.7E-17166199IPR000679Zinc finger, GATA-type
PROSITE patternPS003440166191IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MSPVYLNPQS SSPIPFLELK GDQQHSFFAH LHDDFASTNN NSSFSFNSHN HHNSEEILSL  60
GYSRHEQQKV EKLVLSHEKA SDLGSWLQSN ANGDDGGSGY NYSFNLEEEQ KIESVNYNDQ  120
MYSRKWKPSK VRIMQKMMTT SKRSVDNKQL DHDLAKRQNS DVIRVCSDCH TTTTPLWRSG  180
PQGPKSLCNA CGIRQRKARR AAMAAAATAG YNGGNDAIVT SISRVEAPKP KVQEMKSERG  240
LDHHHQKSNT LPLKKRSKII DAARTNNYST HHNNAKKLCF EDFALSSNKD YLNKRSFPRD  300
EEEGAILLMA LSCGLACSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010667257.10.0PREDICTED: putative GATA transcription factor 22
TrEMBLA0A0J8B3F70.0A0A0J8B3F7_BETVU; Uncharacterized protein
STRINGXP_010667257.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.12e-26cytokinin-responsive gata factor 1