PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv_004280_axqp.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C2H2
Protein Properties Length: 290aa    MW: 31838.1 Da    PI: 8.5835
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv_004280_axqp.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.001224246223
                        EETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                        +Cp C+ +Fs+   L+ H  + H
  Bv_004280_axqp.t1 224 VCPQCNVRFSSVTALVEHVEKvH 246
                        6*****************99888 PP
2zf-C2H216.91.7e-05262284223
                        EETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                        +Cp+C+k F+++  L+ H  + H
  Bv_004280_axqp.t1 262 VCPKCSKGFRDPVALVEHVEKdH 284
                        7*****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183106.28E-12452No hitNo description
PROSITE profilePS510397.6991056IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.102.2E-101148IPR000058Zinc finger, AN1-type
PfamPF014288.6E-131349IPR000058Zinc finger, AN1-type
SMARTSM001542.6E-41352IPR000058Zinc finger, AN1-type
SuperFamilySSF1183102.22E-887142No hitNo description
Gene3DG3DSA:4.10.1110.101.4E-1090146IPR000058Zinc finger, AN1-type
PROSITE profilePS510397.76298151IPR000058Zinc finger, AN1-type
PfamPF014285.2E-8101140IPR000058Zinc finger, AN1-type
SMARTSM001540.19101142IPR000058Zinc finger, AN1-type
PROSITE profilePS501578.746223251IPR007087Zinc finger, C2H2
SMARTSM003550.017223246IPR015880Zinc finger, C2H2-like
PfamPF138940.0014225246No hitNo description
PROSITE patternPS000280225246IPR007087Zinc finger, C2H2
SMARTSM003555.3261284IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.725261289IPR007087Zinc finger, C2H2
PROSITE patternPS000280263284IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MGTPAFPNLG KHCFVDDCKQ IDFLPFTCDR CHQVFCLEHR SYKQHQCPHG DNQGVTVVIC  60
PLCAKGVRLI PDEDPNITWE SHVNTACDPK NYEKVTKKRK CPVTGCKETL VFSNTVKCKD  120
CKIDHCLKHR FGPDHKCSGP PKSNTGFPFM GLLNTTSRKE VSRSNQPVQS KSSAWSRFVS  180
AASSARASAE AGMAKLSSDF NQTLQVGQGS NSTVNTGGSG GQEVCPQCNV RFSSVTALVE  240
HVEKVHERSN NRSSVRKLSI DVCPKCSKGF RDPVALVEHV EKDHGGTSRV
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010666757.10.0PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
SwissprotQ8VZ421e-121SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
TrEMBLA0A0J8B7C50.0A0A0J8B7C5_BETVU; Uncharacterized protein
STRINGXP_010666757.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-117C2H2 family protein