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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv_002120_fpmp.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | NF-YA | ||||||||
Protein Properties | Length: 224aa MW: 24873.2 Da PI: 10.0491 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 106.8 | 1.8e-33 | 73 | 129 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 dep+YVNaKQy++Il+RRq+Rak+e+++kl k rkpylheSRh hAl+R RgsgGrF Bv_002120_fpmp.t1 73 DEPIYVNAKQYHGILRRRQSRAKMEAQNKL-VKIRKPYLHESRHLHALNRVRGSGGRF 129 79****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 6.4E-37 | 71 | 132 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.91 | 72 | 132 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 2.0E-27 | 74 | 129 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 4.2E-24 | 75 | 97 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 4.2E-24 | 106 | 129 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MDQVKPIYMM DHLDMAYSGG QIDYGRAMTC MPYPCGDPYY NGLLTAYGTT HIQPHMMGIT 60 TARVPLPLDI SEDEPIYVNA KQYHGILRRR QSRAKMEAQN KLVKIRKPYL HESRHLHALN 120 RVRGSGGRFL STKKQQKSDP TSAIRNRSIH GSNALGCIGN NMVFEPHQAQ RMATGTSDVS 180 NGNAFFQQQE GGFLGISSSH TGGGVQRSGA FIHNSNQHQA SVVR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 1e-22 | 73 | 144 | 2 | 76 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010666451.1 | 1e-168 | PREDICTED: nuclear transcription factor Y subunit A-7-like | ||||
TrEMBL | A0A0J8DZ11 | 1e-167 | A0A0J8DZ11_BETVU; Uncharacterized protein | ||||
STRING | XP_010666451.1 | 1e-167 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14020.1 | 2e-43 | nuclear factor Y, subunit A6 |