PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv_000980_ejkk.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family GRF
Protein Properties Length: 380aa    MW: 42246.1 Da    PI: 8.5442
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv_000980_ejkk.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.56.2e-2587131145
                WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                        d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk++e+
  Bv_000980_ejkk.t1  87 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVES 131
                        79****************************************986 PP
2QLQ637.8e-222054236
                QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                       +FTa+Q+q+L++Q+l+yKy+aa++P+Pp+Ll+ i+
  Bv_000980_ejkk.t1 20 PFTATQWQELEHQALIYKYMAAGVPIPPDLLFTIK 54
                       8******************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.5E-131955IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.6072055IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.9E-162053IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.41787131IPR014977WRC domain
PfamPF088791.3E-2088130IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0030912Biological Processresponse to deep water
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MSTATATVGG GGGGGRSKFP FTATQWQELE HQALIYKYMA AGVPIPPDLL FTIKRSLDSS  60
LSSKLFPYQP SPLGWNPYQM GYGKKIDPEP GRCRRTDGKK WRCSKEAYPD SKYCERHMHR  120
GKNRSRKPVE SPLTTTSTTV SNNNNNNNNN NNSAANSSLT VAAAAAAASL TNQSLLNKNP  180
SSVSTSLFSL PSSDSSCNSH LLYPHSSYNH KDYRERYYQG LKEEVGEHAF FTESSGSSMR  240
GFSGSSMDES WQIGGGSNID HHQQQQQQSK QSGGYPNYLQ QLQSNSTTSN NGTSAKQEKQ  300
CYIWGRDFNC DLSMKVEEER ENFHEKTTHH FFDEWPIKSG GRGGRDSSWH DSSSTTQLSI  360
SIPSSTSHHH DFFLTNSRDS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4680353e-43AM468035.1 Vitis vinifera contig VV78X155042.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010666262.10.0PREDICTED: growth-regulating factor 1
TrEMBLA0A0J8B8A10.0A0A0J8B8A1_BETVU; Uncharacterized protein
STRINGXP_010666262.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.12e-51growth-regulating factor 5