PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv_000250_ipex.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family GRF
Protein Properties Length: 533aa    MW: 59066.5 Da    PI: 6.4227
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv_000250_ipex.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.41.4e-24219262144
                WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                        daepgrCrRtDGKkWRCsr+v +++k+CErH+hrgr rsrk++e
  Bv_000250_ipex.t1 219 DAEPGRCRRTDGKKWRCSRDVAPNQKYCERHMHRGRPRSRKHVE 262
                        79****************************************97 PP
2QLQ55.22.1e-19151181232
                QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLl 32 
                        +FTaaQ+ +L++Q+++yKy++a++PvPp+Ll
  Bv_000250_ipex.t1 151 PFTAAQWKELERQAMIYKYMMASLPVPPDLL 181
                        8*****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.3E-12150186IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.555151186IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.6E-14151182IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.734219263IPR014977WRC domain
PfamPF088794.7E-20220262IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MKKNTTGNSI SNENGVSRKK FQDGQVVVVE LGLKLQQQQQ DQSRSFLCNQ SSRAVDVVVD  60
DDDDDDHDHN NHDDVDVNGG STCNVYNNMI SDNNINPISY SVVGDSSSTT TTTTTTSVRG  120
LQPFDVSSYY TSANPFFKSS GGMATTTMGF PFTAAQWKEL ERQAMIYKYM MASLPVPPDL  180
LYSAFATNFS PPSTFTPASY FLGKYGSGIS MRWSGNSKDA EPGRCRRTDG KKWRCSRDVA  240
PNQKYCERHM HRGRPRSRKH VELQQQQQQQ QQQQQQQHQQ QHQQQQQQHQ QHQQHHHSVS  300
INNKDNDNNA PTKKTRLTDS SPSNPQCVGS SVQPSTKASI FNHHLVSNSN PFEDSRNLGW  360
SDEQQWSQMV QTNMNSSVFQ HQFNGEPLNL NSHAGFNPKS DDLGLLERPL IDAWSNGGNG  420
NELSLASSNG GNSNSIDEEM CQIHMGLGLI DSWVTSTTTP GGPLAEVLRP GNPAMSDVSE  480
IEFITPPATA VSSPSGVLQK TLATFSDSSE SNSPITCHNN SKANSDMPFH WLN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0944812e-82EU094481.1 Amaranthus hypochondriacus clone AHAAC006 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010666149.10.0PREDICTED: growth-regulating factor 7
TrEMBLA0A0J8B8Z50.0A0A0J8B8Z5_BETVU; Uncharacterized protein
STRINGXP_010666149.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53660.11e-36growth-regulating factor 7