PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv9_209600_asxm.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

HB-other

Protein Properties

Length: 1826aa MW: 203572 Da PI: 4.9286

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv9_209600_asxm.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.6	4.2e-18	29	85	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 + kR t++qle+Le+ ++ yps++ r+eL+++lgLt+rq ++WF+ rR k++k Bv9_209600_asxm.t1 29 KAKRKMKTASQLEVLEKTYQVAAYPSEALRAELSTQLGLTDRQLQMWFCHRRLKDRK 85 56999**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.9E-18	10	85	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.11E-16	16	86	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.584	26	86	IPR001356	Homeobox domain
SMART	SM00389	4.8E-16	28	90	IPR001356	Homeobox domain
CDD	cd00086	7.21E-14	29	87	No hit	No description
Pfam	PF00046	1.1E-15	30	85	IPR001356	Homeobox domain
SMART	SM00571	8.7E-24	579	638	IPR018501	DDT domain
PROSITE profile	PS50827	17.276	579	638	IPR018501	DDT domain
Pfam	PF02791	3.0E-17	581	635	IPR018501	DDT domain
Pfam	PF05066	1.9E-14	761	829	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	1.3E-8	989	1030	IPR028942	WHIM1 domain
Pfam	PF15613	6.5E-11	1171	1242	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1826 aa Download sequence Send to blast
MEGGSSDGEK KPPESGGDHG GGGGSGEPKA KRKMKTASQL EVLEKTYQVA AYPSEALRAE 60 LSTQLGLTDR QLQMWFCHRR LKDRKPQSAG SGKRSRKAEV SPASGAAGGP SAAGTPPLPP 120 PPHVGTKDEM MGGELGNEHG SGSGSGSSPY GHMDPRRAYV GRPGVAVPRI SGHGRYYENP 180 QSVAELRAIA FVEAQLGEPL REDGPALGME FDPLPPGAFG TPIATSMAPQ KPTGRTYEAA 240 LYERPDAKSV KAPSRALHEY QFLPEQPTVR SESYERVAQP HYYGSPSDGP GTKTPPLSSG 300 RSYIHGYEEV PVSYGVPNQM PSLNLMSQQG KVGGLMPSTS GDCEANARKS PYMNMGMESP 360 FSAHTISGLD STLMPSERRV SQEEDAGRVE RKRKNEEARV AKEIEAHEKK MRKELERQDI 420 LRRKREEQMR KDMERQDRER RKEEERLLRE KQREEERYQR EQKREMERKE KFLLKESIRA 480 EKMRQKEELR REREAARQKA ANDRAVARRL AKESTELIED ERLELMEIAA SKKSLTSILA 540 LDSETLQNLD SYRDMLQTFP PKSVQLKKPF ATRPWMGSED NVGNLLMVWR FLITFADVLG 600 LWPFTLDEFV QAFHDYDPRL LGEMHLALLR TIIKDIEDVA RTPSTGLGVN QNSVANPVGG 660 HPQIVEGAYA WGFDIRSWQC NLSPLTWPEI LRQFALSAGF GPKLKKRNVE QSYSREENEG 720 NDGIDIISNL RTGAAVENAV SIMRERGYSN PRRSRHRLTP GTVKFAAFHV LSLEGGDGLN 780 ILEVADRIQK SGLRDLTTSK TPEASIAAAL SRDTKLFERT APSTYCVRSP YRKDPVDAEA 840 ILSTAREKIR VFKSGFSDEV EADVDGMEAD DAEKDEDSES DIAEDPEIDD LGTELTLNKE 900 ANPLYDRNIC VPKVGSDNGS GDLHSRVDKA PNGLANAGDV LSLAHLESFE ELNDNGCLVE 960 ESMDVDGIFR EGNDTDHEDT DIDESFPGEP WVQGLMEGEY SNLSVEERLN ALVALIGVAN 1020 EGNTIRVVLE ERLEAATALK KQMWAEAQLD KRRLKEEYLM KTPYAGFTPN KAELNTMTSA 1080 PDSRQSPMLV LDENNNEAMV NLAMQHKPFH DSHNDNNLHA DLSSDKNLAT PNSVAGSDNL 1140 ALQQSVYAAE RCRAQLKSYI GHKAEEMYVY RSLPLGQDRR RNRYWQFIAS ASCNDPGAGR 1200 IFVELHNGGW RLIDSEQGFD ALLASMDVRG VRESHLHALL RKVEPLFKES VRKNISTNRQ 1260 NDSIKAEASE VPFNPESSGG TDSPSSTVCA SNSEMPEPSS SFKIESGRNN IEIKNAFRRY 1320 KHFEEWMWRE CFSSSLLCAT KYGKKRCMEL VCRCDSCHAL YFFEDNHCTS CHKTYTALDN 1380 SFNFSEHIAQ CQEIKVNFEW NLQHLECPPP RIRLIKAFLA LLEVCIPVEA LQPVWSETYR 1440 KSWGMKLHMS SSAEDLLQVL TLLEGAIKRD FLSSNFQTTG ELLASGNAVG YVVNDASNFG 1500 TVTMLPWIPQ TTFAVALRLM ELDSAVSYLP DQKAKDTEPR HFLNLPSKYT VVRNVQEDEL 1560 AGPLGEHQQE DAWLDRGGDI GFASIRSSRG RGRGRTRGGR SQRVVGSRGG DRRSLASNEK 1620 LGEVLGGWKG RSTRGKGGRK RGRRSVRKRQ KSVKKAPASV SGARGLPEPI IFDKSPPGFS 1680 TRDEWNGEES RQMQVDEVDV NDDSNSERSD YDDDENGQAS GDEYDDMAID HYAAVYNGRP 1740 THLSDYNIDD VDEEDVDPDD VVDDDVDEDD VDVGGEYEQG DLDVGGYLNA DSDDEIEENE 1800 EEDMGGMRDG DQDDTSESGS TDYSSD

Sequence ? help Back to Top

Protein Sequence Length: 1826 aa Download sequence Send to blast

MEGGSSDGEK KPPESGGDHG GGGGSGEPKA KRKMKTASQL EVLEKTYQVA AYPSEALRAE  60
LSTQLGLTDR QLQMWFCHRR LKDRKPQSAG SGKRSRKAEV SPASGAAGGP SAAGTPPLPP  120
PPHVGTKDEM MGGELGNEHG SGSGSGSSPY GHMDPRRAYV GRPGVAVPRI SGHGRYYENP  180
QSVAELRAIA FVEAQLGEPL REDGPALGME FDPLPPGAFG TPIATSMAPQ KPTGRTYEAA  240
LYERPDAKSV KAPSRALHEY QFLPEQPTVR SESYERVAQP HYYGSPSDGP GTKTPPLSSG  300
RSYIHGYEEV PVSYGVPNQM PSLNLMSQQG KVGGLMPSTS GDCEANARKS PYMNMGMESP  360
FSAHTISGLD STLMPSERRV SQEEDAGRVE RKRKNEEARV AKEIEAHEKK MRKELERQDI  420
LRRKREEQMR KDMERQDRER RKEEERLLRE KQREEERYQR EQKREMERKE KFLLKESIRA  480
EKMRQKEELR REREAARQKA ANDRAVARRL AKESTELIED ERLELMEIAA SKKSLTSILA  540
LDSETLQNLD SYRDMLQTFP PKSVQLKKPF ATRPWMGSED NVGNLLMVWR FLITFADVLG  600
LWPFTLDEFV QAFHDYDPRL LGEMHLALLR TIIKDIEDVA RTPSTGLGVN QNSVANPVGG  660
HPQIVEGAYA WGFDIRSWQC NLSPLTWPEI LRQFALSAGF GPKLKKRNVE QSYSREENEG  720
NDGIDIISNL RTGAAVENAV SIMRERGYSN PRRSRHRLTP GTVKFAAFHV LSLEGGDGLN  780
ILEVADRIQK SGLRDLTTSK TPEASIAAAL SRDTKLFERT APSTYCVRSP YRKDPVDAEA  840
ILSTAREKIR VFKSGFSDEV EADVDGMEAD DAEKDEDSES DIAEDPEIDD LGTELTLNKE  900
ANPLYDRNIC VPKVGSDNGS GDLHSRVDKA PNGLANAGDV LSLAHLESFE ELNDNGCLVE  960
ESMDVDGIFR EGNDTDHEDT DIDESFPGEP WVQGLMEGEY SNLSVEERLN ALVALIGVAN  1020
EGNTIRVVLE ERLEAATALK KQMWAEAQLD KRRLKEEYLM KTPYAGFTPN KAELNTMTSA  1080
PDSRQSPMLV LDENNNEAMV NLAMQHKPFH DSHNDNNLHA DLSSDKNLAT PNSVAGSDNL  1140
ALQQSVYAAE RCRAQLKSYI GHKAEEMYVY RSLPLGQDRR RNRYWQFIAS ASCNDPGAGR  1200
IFVELHNGGW RLIDSEQGFD ALLASMDVRG VRESHLHALL RKVEPLFKES VRKNISTNRQ  1260
NDSIKAEASE VPFNPESSGG TDSPSSTVCA SNSEMPEPSS SFKIESGRNN IEIKNAFRRY  1320
KHFEEWMWRE CFSSSLLCAT KYGKKRCMEL VCRCDSCHAL YFFEDNHCTS CHKTYTALDN  1380
SFNFSEHIAQ CQEIKVNFEW NLQHLECPPP RIRLIKAFLA LLEVCIPVEA LQPVWSETYR  1440
KSWGMKLHMS SSAEDLLQVL TLLEGAIKRD FLSSNFQTTG ELLASGNAVG YVVNDASNFG  1500
TVTMLPWIPQ TTFAVALRLM ELDSAVSYLP DQKAKDTEPR HFLNLPSKYT VVRNVQEDEL  1560
AGPLGEHQQE DAWLDRGGDI GFASIRSSRG RGRGRTRGGR SQRVVGSRGG DRRSLASNEK  1620
LGEVLGGWKG RSTRGKGGRK RGRRSVRKRQ KSVKKAPASV SGARGLPEPI IFDKSPPGFS  1680
TRDEWNGEES RQMQVDEVDV NDDSNSERSD YDDDENGQAS GDEYDDMAID HYAAVYNGRP  1740
THLSDYNIDD VDEEDVDPDD VVDDDVDEDD VDVGGEYEQG DLDVGGYLNA DSDDEIEENE  1800
EEDMGGMRDG DQDDTSESGS TDYSSD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010689786.1	0.0	PREDICTED: homeobox-DDT domain protein RLT2 isoform X2
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	A0A0K9RUY6	0.0	A0A0K9RUY6_SPIOL; Uncharacterized protein
STRING	XP_010689786.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator