PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv9_209600_asxm.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | HB-other | ||||||||
Protein Properties | Length: 1826aa MW: 203572 Da PI: 4.9286 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.6 | 4.2e-18 | 29 | 85 | 1 | 57 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 + kR t++qle+Le+ ++ yps++ r+eL+++lgLt+rq ++WF+ rR k++k Bv9_209600_asxm.t1 29 KAKRKMKTASQLEVLEKTYQVAAYPSEALRAELSTQLGLTDRQLQMWFCHRRLKDRK 85 56999**************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.9E-18 | 10 | 85 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.11E-16 | 16 | 86 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.584 | 26 | 86 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.8E-16 | 28 | 90 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.21E-14 | 29 | 87 | No hit | No description |
Pfam | PF00046 | 1.1E-15 | 30 | 85 | IPR001356 | Homeobox domain |
SMART | SM00571 | 8.7E-24 | 579 | 638 | IPR018501 | DDT domain |
PROSITE profile | PS50827 | 17.276 | 579 | 638 | IPR018501 | DDT domain |
Pfam | PF02791 | 3.0E-17 | 581 | 635 | IPR018501 | DDT domain |
Pfam | PF05066 | 1.9E-14 | 761 | 829 | IPR007759 | HB1/Asxl, restriction endonuclease HTH domain |
Pfam | PF15612 | 1.3E-8 | 989 | 1030 | IPR028942 | WHIM1 domain |
Pfam | PF15613 | 6.5E-11 | 1171 | 1242 | IPR028941 | WHIM2 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1826 aa Download sequence Send to blast |
MEGGSSDGEK KPPESGGDHG GGGGSGEPKA KRKMKTASQL EVLEKTYQVA AYPSEALRAE 60 LSTQLGLTDR QLQMWFCHRR LKDRKPQSAG SGKRSRKAEV SPASGAAGGP SAAGTPPLPP 120 PPHVGTKDEM MGGELGNEHG SGSGSGSSPY GHMDPRRAYV GRPGVAVPRI SGHGRYYENP 180 QSVAELRAIA FVEAQLGEPL REDGPALGME FDPLPPGAFG TPIATSMAPQ KPTGRTYEAA 240 LYERPDAKSV KAPSRALHEY QFLPEQPTVR SESYERVAQP HYYGSPSDGP GTKTPPLSSG 300 RSYIHGYEEV PVSYGVPNQM PSLNLMSQQG KVGGLMPSTS GDCEANARKS PYMNMGMESP 360 FSAHTISGLD STLMPSERRV SQEEDAGRVE RKRKNEEARV AKEIEAHEKK MRKELERQDI 420 LRRKREEQMR KDMERQDRER RKEEERLLRE KQREEERYQR EQKREMERKE KFLLKESIRA 480 EKMRQKEELR REREAARQKA ANDRAVARRL AKESTELIED ERLELMEIAA SKKSLTSILA 540 LDSETLQNLD SYRDMLQTFP PKSVQLKKPF ATRPWMGSED NVGNLLMVWR FLITFADVLG 600 LWPFTLDEFV QAFHDYDPRL LGEMHLALLR TIIKDIEDVA RTPSTGLGVN QNSVANPVGG 660 HPQIVEGAYA WGFDIRSWQC NLSPLTWPEI LRQFALSAGF GPKLKKRNVE QSYSREENEG 720 NDGIDIISNL RTGAAVENAV SIMRERGYSN PRRSRHRLTP GTVKFAAFHV LSLEGGDGLN 780 ILEVADRIQK SGLRDLTTSK TPEASIAAAL SRDTKLFERT APSTYCVRSP YRKDPVDAEA 840 ILSTAREKIR VFKSGFSDEV EADVDGMEAD DAEKDEDSES DIAEDPEIDD LGTELTLNKE 900 ANPLYDRNIC VPKVGSDNGS GDLHSRVDKA PNGLANAGDV LSLAHLESFE ELNDNGCLVE 960 ESMDVDGIFR EGNDTDHEDT DIDESFPGEP WVQGLMEGEY SNLSVEERLN ALVALIGVAN 1020 EGNTIRVVLE ERLEAATALK KQMWAEAQLD KRRLKEEYLM KTPYAGFTPN KAELNTMTSA 1080 PDSRQSPMLV LDENNNEAMV NLAMQHKPFH DSHNDNNLHA DLSSDKNLAT PNSVAGSDNL 1140 ALQQSVYAAE RCRAQLKSYI GHKAEEMYVY RSLPLGQDRR RNRYWQFIAS ASCNDPGAGR 1200 IFVELHNGGW RLIDSEQGFD ALLASMDVRG VRESHLHALL RKVEPLFKES VRKNISTNRQ 1260 NDSIKAEASE VPFNPESSGG TDSPSSTVCA SNSEMPEPSS SFKIESGRNN IEIKNAFRRY 1320 KHFEEWMWRE CFSSSLLCAT KYGKKRCMEL VCRCDSCHAL YFFEDNHCTS CHKTYTALDN 1380 SFNFSEHIAQ CQEIKVNFEW NLQHLECPPP RIRLIKAFLA LLEVCIPVEA LQPVWSETYR 1440 KSWGMKLHMS SSAEDLLQVL TLLEGAIKRD FLSSNFQTTG ELLASGNAVG YVVNDASNFG 1500 TVTMLPWIPQ TTFAVALRLM ELDSAVSYLP DQKAKDTEPR HFLNLPSKYT VVRNVQEDEL 1560 AGPLGEHQQE DAWLDRGGDI GFASIRSSRG RGRGRTRGGR SQRVVGSRGG DRRSLASNEK 1620 LGEVLGGWKG RSTRGKGGRK RGRRSVRKRQ KSVKKAPASV SGARGLPEPI IFDKSPPGFS 1680 TRDEWNGEES RQMQVDEVDV NDDSNSERSD YDDDENGQAS GDEYDDMAID HYAAVYNGRP 1740 THLSDYNIDD VDEEDVDPDD VVDDDVDEDD VDVGGEYEQG DLDVGGYLNA DSDDEIEENE 1800 EEDMGGMRDG DQDDTSESGS TDYSSD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269|PubMed:22694359, ECO:0000269|PubMed:23872538}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010689786.1 | 0.0 | PREDICTED: homeobox-DDT domain protein RLT2 isoform X2 | ||||
Swissprot | Q9FFH1 | 0.0 | RLT2_ARATH; Homeobox-DDT domain protein RLT2 | ||||
TrEMBL | A0A0K9RUY6 | 0.0 | A0A0K9RUY6_SPIOL; Uncharacterized protein | ||||
STRING | XP_010689786.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44180.1 | 0.0 | Homeodomain-like transcriptional regulator |