PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv9_209500_fuun.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

C2H2

Protein Properties

Length: 507aa MW: 55857.2 Da PI: 8.9284

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv9_209500_fuun.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.6	4.6e-05	58	78	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk F r nL+ H r H Bv9_209500_fuun.t1 58 CEICGKGFQRDQNLQLHRRGH 78 *******************88 PP
2	zf-C2H2	13.3	0.00025	132	154	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ Bv9_209500_fuun.t1 132 WKCEKCNKKYAVQSDWKAHSKTC 154 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	4.4E-5	55	78	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	9.45E-7	55	78	No hit	No description
PROSITE profile	PS50157	11.489	56	78	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.076	56	78	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	58	78	IPR007087	Zinc finger, C2H2
SMART	SM00355	250	97	127	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.6E-4	120	153	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	9.45E-7	127	152	No hit	No description
SMART	SM00355	100	132	152	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 507 aa Download sequence Send to blast
MADQEVISNG NFLQDPVVGS NDTLPPKKKR NLPGNPDPEA EVIALSPKTL MATNRFLCEI 60 CGKGFQRDQN LQLHRRGHNL PWKLKQRTSK EPRKRVYVCP EKTCVHNHPS RALGDLTGIK 120 KHFCRKHGEK KWKCEKCNKK YAVQSDWKAH SKTCGTREYK CDCGTIFSRR DSFITHRAFC 180 DALAEETARM NAASAQFNIS AAATNNLNYH HIMGSNLGPA VAMAQHFSSI FRPPTKDETL 240 DHPQHQRGGI FPLWLGTQLT QPGGYHDTMQ NSPNISIQSH DIQHQLSSTI NSINSHNTPL 300 MVPSSNPHTD DNYNNLNWVF GSKIANNNPL NNHNNGEELG VLTNNIASTT TTTTTPLPSL 360 YSTQHHPQTS SSNCSHFMSA TALLQKAAQM GSTSSTNRND AFFLGNFGLV MKEDNDNIDR 420 NNTSNYNGGS IFGTSNSTTT NVGSDVEGSV DDLSTMTTMY NVNPAKRQRM SSPSTQGGVG 480 GGRGQTRDFL GVGSQPVCRP SSINGWI

Sequence ? help Back to Top

Protein Sequence Length: 507 aa Download sequence Send to blast

MADQEVISNG NFLQDPVVGS NDTLPPKKKR NLPGNPDPEA EVIALSPKTL MATNRFLCEI  60
CGKGFQRDQN LQLHRRGHNL PWKLKQRTSK EPRKRVYVCP EKTCVHNHPS RALGDLTGIK  120
KHFCRKHGEK KWKCEKCNKK YAVQSDWKAH SKTCGTREYK CDCGTIFSRR DSFITHRAFC  180
DALAEETARM NAASAQFNIS AAATNNLNYH HIMGSNLGPA VAMAQHFSSI FRPPTKDETL  240
DHPQHQRGGI FPLWLGTQLT QPGGYHDTMQ NSPNISIQSH DIQHQLSSTI NSINSHNTPL  300
MVPSSNPHTD DNYNNLNWVF GSKIANNNPL NNHNNGEELG VLTNNIASTT TTTTTPLPSL  360
YSTQHHPQTS SSNCSHFMSA TALLQKAAQM GSTSSTNRND AFFLGNFGLV MKEDNDNIDR  420
NNTSNYNGGS IFGTSNSTTT NVGSDVEGSV DDLSTMTTMY NVNPAKRQRM SSPSTQGGVG  480
GGRGQTRDFL GVGSQPVCRP SSINGWI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	5e-36	128	194	3	69	Zinc finger protein JACKDAW
5b3h_F	5e-36	128	194	3	69	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269\|PubMed:17785527, ECO:0000269\|PubMed:21935722, ECO:0000269\|PubMed:24821766, ECO:0000269\|PubMed:25829440}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00125	DAP	Transfer from AT1G03840	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269\|PubMed:21935722}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010689779.1	0.0	PREDICTED: zinc finger protein MAGPIE
Swissprot	Q9ZWA6	1e-145	IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBL	A0A061E4I0	0.0	A0A061E4I0_THECC; C2H2 and C2HC zinc fingers superfamily protein
STRING	XP_010689779.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44160.1	1e-122	C2H2-like zinc finger protein

Publications ? help Back to Top
Muñoz-Strale D,León G Identification of two highly specific pollen promoters using transcriptomic data. Plant Physiol. Biochem., 2014. 83: p. 292-9 [PMID:25208507] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]