PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

NAC

Protein Properties

Length: 346aa MW: 39644 Da PI: 7.2011

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv9_203240_qoku.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.4	1.2e-52	9	138	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgk 88 +ppGfrFhPtdeel+++yLkkk++ +k+++ ev++evd++k+ePw+L++ ++ + ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+ Bv9_203240_qoku.t1 9 VPPGFRFHPTDEELLHYYLKKKITFQKFDM-EVVREVDLNKMEPWELQErcRIGStPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGR 98 69**************************.99**********963433332556**************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 dk + + + +++g++ktLvfy+grap+g+ktdW+mheyrle Bv9_203240_qoku.t1 99 DKCIRN-SFKKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 138 *9.8899**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.37E-59	8	161	IPR003441	NAC domain
PROSITE profile	PS51005	58.072	9	161	IPR003441	NAC domain
Pfam	PF02365	8.0E-28	10	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009834	Biological Process	plant-type secondary cell wall biogenesis
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048829	Biological Process	root cap development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MGSSSNGGVP PGFRFHPTDE ELLHYYLKKK ITFQKFDMEV VREVDLNKME PWELQERCRI 60 GSTPQNEWYF FSHKDRKYPT GSRTNRATNA GFWKATGRDK CIRNSFKKIG MRKTLVFYRG 120 RAPHGQKTDW IMHEYRLEDT DDDPQANLSE DGWVICRVFK KKNLFKIGGD QGGGTTTSAT 180 SDQLLCNPSG SSNTNQSRPF IPRDHTNNPH YQHHLLLRNN DPQPTSTFDL YSMKPDLGLH 240 NYSHPHQITA LPPHDYPTHP HHLYQAATAA CEAVPTALEM GACEPSDPHH QGINEWTMLD 300 RVVGHQQDDP NGDQQGNNLS STVHEINQQQ QQLSLRGEMD FWGYAK

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MGSSSNGGVP PGFRFHPTDE ELLHYYLKKK ITFQKFDMEV VREVDLNKME PWELQERCRI  60
GSTPQNEWYF FSHKDRKYPT GSRTNRATNA GFWKATGRDK CIRNSFKKIG MRKTLVFYRG  120
RAPHGQKTDW IMHEYRLEDT DDDPQANLSE DGWVICRVFK KKNLFKIGGD QGGGTTTSAT  180
SDQLLCNPSG SSNTNQSRPF IPRDHTNNPH YQHHLLLRNN DPQPTSTFDL YSMKPDLGLH  240
NYSHPHQITA LPPHDYPTHP HHLYQAATAA CEAVPTALEM GACEPSDPHH QGINEWTMLD  300
RVVGHQQDDP NGDQQGNNLS STVHEINQQQ QQLSLRGEMD FWGYAK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	8e-51	9	163	15	170	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269\|PubMed:20197506}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00431	DAP	Transfer from AT4G10350	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010688726.1	0.0	PREDICTED: protein BEARSKIN2
Swissprot	Q9SV87	1e-136	BRN2_ARATH; Protein BEARSKIN2
TrEMBL	A0A0K9S0Z7	0.0	A0A0K9S0Z7_SPIOL; Uncharacterized protein
STRING	XP_010688726.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G10350.1	1e-132	NAC domain containing protein 70

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Kamiya M, et al. Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis. Development, 2016. 143(21): p. 4063-4072 [PMID:27803060]