PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Bv8_201610_mjwh.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

bHLH

Protein Properties

Length: 467aa MW: 50980.9 Da PI: 4.9723

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv8_201610_mjwh.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.7	1.3e-05	356	393	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L Bv8_201610_mjwh.t1 356 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 393 677888999*****998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.973	344	393	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.82E-6	354	398	No hit	No description
SuperFamily	SSF47459	1.7E-11	354	406	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.0E-9	358	401	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 467 aa Download sequence Send to blast
MGEEFQGGVC GTWWNPPHSL FSGGVSSPCS VAQLGGGFDM GSFGWPNEVI KGSKFNNNNN 60 NNNNNPTFDN LIFPDQMDSS LDILGFGLSP TSSTTDWNHQ NLLCNTGNNE GNFDSILQDN 120 MNNTRLSSYG MEANSQNIMN SSNFTSQDAS PPMALTASSN SSGDSSTITS EGGLATSFPM 180 SSSASYLIQS LFDDCDEAQV LHEPQSAIPQ YQLITNPSNY GSLDTSCEII SSNAWVETSV 240 GNTHPSLPSQ QHILQSNKLN NGGMSALIHD HGQVFSGQYS PTTLNNIRAS LLNSLQSRSR 300 GPSFNQKSHS STSLPNKVNN EEPRRESKNN TSNNDQPQAK RPRIETPSPL PTFKVRKEKL 360 GDRITALQQL VSPFGKTDTA SVLHEAIEYI KFLHDQVHVL STPYLKGGNP MQQQDCDKLK 420 DNQEECKQEL RSRGLCLVPI SSTYPVAQET PVDFWTPTFG GTTTTFR

Sequence ? help Back to Top

Protein Sequence Length: 467 aa Download sequence Send to blast

MGEEFQGGVC GTWWNPPHSL FSGGVSSPCS VAQLGGGFDM GSFGWPNEVI KGSKFNNNNN  60
NNNNNPTFDN LIFPDQMDSS LDILGFGLSP TSSTTDWNHQ NLLCNTGNNE GNFDSILQDN  120
MNNTRLSSYG MEANSQNIMN SSNFTSQDAS PPMALTASSN SSGDSSTITS EGGLATSFPM  180
SSSASYLIQS LFDDCDEAQV LHEPQSAIPQ YQLITNPSNY GSLDTSCEII SSNAWVETSV  240
GNTHPSLPSQ QHILQSNKLN NGGMSALIHD HGQVFSGQYS PTTLNNIRAS LLNSLQSRSR  300
GPSFNQKSHS STSLPNKVNN EEPRRESKNN TSNNDQPQAK RPRIETPSPL PTFKVRKEKL  360
GDRITALQQL VSPFGKTDTA SVLHEAIEYI KFLHDQVHVL STPYLKGGNP MQQQDCDKLK  420
DNQEECKQEL RSRGLCLVPI SSTYPVAQET PVDFWTPTFG GTTTTFR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010665766.1	0.0	PREDICTED: transcription factor bHLH112
TrEMBL	A0A0J8B6H7	0.0	A0A0J8B6H7_BETVU; Uncharacterized protein
STRING	XP_010665766.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.3	3e-49	bHLH family protein