PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv8_201090_hune.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family HSF
Protein Properties Length: 409aa    MW: 46930.8 Da    PI: 4.9199
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv8_201090_hune.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.55.7e-35151062102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+ye+++d+++++++sws++++sfvvl++ ef++ +Lp++Fkh+nf+SF+RQLn+YgF+kv+ e+         weF+++ F +g+ +
  Bv8_201090_hune.t1  15 FLTKTYEMVDDPSTDSIVSWSSSNKSFVVLNPPEFSRILLPRFFKHNNFSSFIRQLNTYGFRKVDPEQ---------WEFANDDFIRGQSH 96 
                         9***************************************************************9998.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++i+r+k 
  Bv8_201090_hune.t1  97 LLKNIHRRKP 106
                         *******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467859.07E-3611104IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.1E-6111104IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.2E-3712104IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.8E-201538IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.4E-3015104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-205365IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405478IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-206678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0009733Biological Processresponse to auxin
GO:0009958Biological Processpositive gravitropism
GO:0048527Biological Processlateral root development
GO:0048530Biological Processfruit morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MMDELQGGSN ALPPFLTKTY EMVDDPSTDS IVSWSSSNKS FVVLNPPEFS RILLPRFFKH  60
NNFSSFIRQL NTYGFRKVDP EQWEFANDDF IRGQSHLLKN IHRRKPVHSH SLTNLHGQVN  120
SNPLTDSERQ KYKDDIERLK HEREFLLLES QRQRQEEQDI ELQVQPLRER LQHMEQRQHT  180
FVSYFAQLLQ KPELALEPQL ENQDRKRRVS SRPEHFNDET SNEDSMCTVR TSRKGSPDYA  240
SGLDLDTELL ERMESSLSFW ETVVEDIGGL SVQRNSSIEL AESTSCVQSP AISYTQLNID  300
VPSNSSRIDM NSEPSVTASV VAPDRVPQEE QEAGTAPAAP QGVNDVFWEQ FLTENPGSSD  360
VQEVQSERKD PGVREKDSRL IDHGRYWLGF RNSNNIPEHI GQLTSAGRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-25710412120Heat shock factor protein 1
5d5u_B4e-25810422129Heat shock factor protein 1
5d5v_B4e-25810422129Heat shock factor protein 1
5d5v_D4e-25810422129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). May be involved in general response to auxin. {ECO:0000269|PubMed:18381353}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat and cold stresses and the herbicide 2,4-dichlorophenoxyacetic acid (2,4-D, auxin analog). {ECO:0000269|PubMed:18381353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010665682.10.0PREDICTED: heat stress transcription factor A-4c
SwissprotQ9FK721e-116HFA4C_ARATH; Heat stress transcription factor A-4c
TrEMBLA0A0J8B6M90.0A0A0J8B6M9_BETVU; Uncharacterized protein
STRINGXP_010665682.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-108heat shock transcription factor A4A
Publications ? help Back to Top
  1. Faragó D,Sass L,Valkai I,Andrási N,Szabados L
    PlantSize Offers an Affordable, Non-destructive Method to Measure Plant Size and Color in Vitro.
    Front Plant Sci, 2018. 9: p. 219
    [PMID:29520290]