PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv8_196780_gare.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family CPP
Protein Properties Length: 590aa    MW: 63337.5 Da    PI: 7.4885
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv8_196780_gare.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR42.11.7e-13110149242
                 TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                         ++k+CnCk+s+Clk+YCeCfa+g++C+  C+C++C+N+ e+
  Bv8_196780_gare.t1 110 RQKQCNCKHSRCLKLYCECFASGVYCDG-CNCNNCCNNVEN 149
                         689*************************.********9875 PP
2TCR51.12.7e-16193232140
                 TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                         k++kgC+Ckks ClkkYCeCf+a+  Cs++CkC dCkN e
  Bv8_196780_gare.t1 193 KHNKGCHCKKSGCLKKYCECFQANILCSDNCKCIDCKNFE 232
                         589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.0E-13109149IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.456110233IPR005172CRC domain
PfamPF036387.0E-10111146IPR005172CRC domain
SMARTSM011142.1E-20193234IPR033467Tesmin/TSO1-like CXC domain
PfamPF036385.2E-13196231IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MEEREKGGNS PPKSTTTADF PAKKLARQLD FTSASGASQP LSISVAQPPS TSAAHRPPQP  60
PPLPQVVVMP PSHLEAAQTP PLPSVRLIKP ESPRARPRAN VEAKDGTPKR QKQCNCKHSR  120
CLKLYCECFA SGVYCDGCNC NNCCNNVENE AARREAVEAT LERNPNAFRP KIASSPHGNR  180
DSREDAGDVV VAKHNKGCHC KKSGCLKKYC ECFQANILCS DNCKCIDCKN FEGSEERQAL  240
FHGDHANNLT YVQQAANAAI TGAIGSSGFT STPNSRKRKG QELFFGPASK DPSLSRVGQL  300
QQASHTKTSG PSAAVSSGSA SRAVNSVSLG GSKFTYRSLL ADIIQPQDVK ELCSVLVVLS  360
EEAAKTIAES NTAEENRAED GRETSHASPV QDIFQCQDES DLKTVLDESA SGNVNDSISP  420
DDSSLDGNDL PKSRPMSPLT LALRCDEQDT MFMAADSPNG LANHVHSSSS RLREQSTSEV  480
YAEQERIVLA KFRDCLNRLI TFGELKETKC SSLARSDSIS FQETGNGAAK SRSDGRNQQD  540
HFSNGVSRPI IAASTKTPSM IAATVTAAPS NNLISQNPPR TENGDVKPSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-3211124211132Protein lin-54 homolog
5fd3_B2e-3211124211132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010688245.10.0PREDICTED: protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD10.0TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A0K9QRU40.0A0A0K9QRU4_SPIOL; Uncharacterized protein
STRINGXP_010688245.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-167Tesmin/TSO1-like CXC domain-containing protein