PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv8_192480_roap.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ARR-B
Protein Properties Length: 633aa    MW: 69012.3 Da    PI: 4.7259
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv8_192480_roap.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.56.3e-28195248155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         kprl W+ eLH++Fv+av+qL G +kA Pk+il+lm+v+gLt+e+v+SHLQkYRl
  Bv8_192480_roap.t1 195 KPRLFWSVELHQKFVDAVNQL-GLDKAFPKKILDLMDVEGLTREKVASHLQKYRL 248
                         79*******************.********************************8 PP
2Response_reg84.14.2e-28141221109
                         EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS
        Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 
                         vl+vdD+ + + l++++l+k +y +v+ +++++eal++lke++  +D++++D+emp+mdG++ll+     e++lp+i+++a+++ + + + 
  Bv8_192480_roap.t1  14 VLVVDDDITCLTLMENLLKKCHY-HVTMTTQAKEALRMLKENKnrFDIVITDVEMPDMDGIKLLQLVGL-EMNLPVIMLSAYSDTKRVMQG 102
                         89*********************.***************988889*******************87755.569****************** PP

                         HHTTESEEEESS--HHHHHH CS
        Response_reg  90 lkaGakdflsKpfdpeelvk 109
                         ++ Ga d+l+Kp+ ++el +
  Bv8_192480_roap.t1 103 IRNGACDYLVKPVRIQELQN 122
                         *****************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363923.3E-1371620IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23008.2E-4211143No hitNo description
SuperFamilySSF521721.32E-3511132IPR011006CheY-like superfamily
SMARTSM004481.3E-3112124IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.72813128IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.6E-2514122IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.51E-2915127No hitNo description
SuperFamilySSF466899.68E-19192252IPR009057Homeodomain-like
PROSITE profilePS5129411.132192251IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-29192253IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-22195248IPR006447Myb domain, plants
PfamPF002496.8E-7200247IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 633 aa     Download sequence    Send to blast
MSLEDERFPV GLRVLVVDDD ITCLTLMENL LKKCHYHVTM TTQAKEALRM LKENKNRFDI  60
VITDVEMPDM DGIKLLQLVG LEMNLPVIML SAYSDTKRVM QGIRNGACDY LVKPVRIQEL  120
QNIWQHVVRR NKSVPLQRTA DQAGGSSTPD STGNTAQDVI NIGKGIEQNS GDDNDDDDEL  180
EEGGRDNEDS ATQKKPRLFW SVELHQKFVD AVNQLGLDKA FPKKILDLMD VEGLTREKVA  240
SHLQKYRLYL RKVNSGSSLQ PGNRLGVFGG EDAHIGSLGG GYGIYRSLAG PGRFPGITSL  300
PDQSGGMLGR LNTAAGLSIR GLSSSPMLQT PPQLPNSSNS FNTLGKFDPS SFSATTQNAN  360
LFQNIPTTMQ ISKSPLLSPP TNSMMLNGNP SLNSRDFSDQ PSFFSPSSNY RALGTGGTAN  420
LLDPNSRPNW GTPIPPAVQS LPFSQDALPA NVSSDGIAPV HAQIQNDPLD IFCGISSLDD  480
LKGSLQSQDC ISGPSNNFNN LGHPQIWQDQ RPDYLLNSCN IPHTSSSLIT AVAPTAGENE  540
RQSNNNMMSA SPFSQLEGVS SQILQQNEVQ KSIDDSNLKF DENFLLSDPK LLSASSQSTS  600
SEYLEDIVGR FLKQGNGETA TGREDFGLDP FLM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-21193254364ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010687814.10.0PREDICTED: two-component response regulator ARR12
SwissprotA2X1N21e-104ORR24_ORYSI; Two-component response regulator ORR24
SwissprotQ6H8051e-104ORR24_ORYSJ; Two-component response regulator ORR24
TrEMBLA0A0K9QUN40.0A0A0K9QUN4_SPIOL; Two-component response regulator
STRINGXP_010687814.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.12e-99response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]