PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv8_182450_hisu.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family NAC
Protein Properties Length: 315aa    MW: 35664.3 Da    PI: 8.2459
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv8_182450_hisu.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM102.17.5e-32682081128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk. 79 
                         lp+G++F+Ptd e++  +L++kv+++       l   +    +i+   +i++++P++Lp  v+++    +fF++ +k+y+tg+rk+r+++ 
  Bv8_182450_hisu.t1  68 LPAGVKFDPTDPEIL-GHLEAKVKSDFsrlhplL---DefipTIEGEnGICYSHPEKLP-GVTKDGVMRHFFHCPSKAYTTGTRKRRKVHt 153
                         799***********9.89*****99886665442...233333665557**********.455556678******************7444 PP

                 NAM  80 .....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                              + +W++tgk++++l  +g+++g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  Bv8_182450_hisu.t1 154 dedggETRWHKTGKTRPILI-NGSVKGFKKILVLYtnYGRQRKPEKTSWVMHQYHL 208
                         56655778************.999***********66589**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-3664227IPR003441NAC domain
PROSITE profilePS5100532.12868227IPR003441NAC domain
PfamPF023653.3E-1469208IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MTWCNINNPS TSSNINININ NNDHTNIPII ESGINSKINP IHTISCPSCG HHIPLQDKAG  60
GINDLPGLPA GVKFDPTDPE ILGHLEAKVK SDFSRLHPLL DEFIPTIEGE NGICYSHPEK  120
LPGVTKDGVM RHFFHCPSKA YTTGTRKRRK VHTDEDGGET RWHKTGKTRP ILINGSVKGF  180
KKILVLYTNY GRQRKPEKTS WVMHQYHLGE NEEEKDGEFV LSKVFYQTQP RQCGSTIKEL  240
PQEKVHHPPL MKTPLNYYHP SYLSYDHHHN HHSNVLADQN RESPPQLIPN LILQAQNKCR  300
SVPPMSECRG FDTGT
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers. Is a direct target of SND1. {ECO:0000269|PubMed:18952777}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010686394.10.0PREDICTED: NAC domain-containing protein 10
SwissprotF4HY611e-111NAC10_ARATH; NAC domain-containing protein 10
TrEMBLA0A0K9R6G21e-162A0A0K9R6G2_SPIOL; Uncharacterized protein
STRINGXP_010686394.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-109NAC domain containing protein 73