PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv8_181200_pssw.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family WRKY
Protein Properties Length: 305aa    MW: 34000.2 Da    PI: 6.08
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv8_181200_pssw.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.67.1e-3077135259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp+++++tY+ eHnh+
  Bv8_181200_pssw.t1  77 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRSDPNTLVVTYSYEHNHP 135
                         69*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182902.48E-2672137IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.5E-3172137IPR003657WRKY domain
SMARTSM007743.5E-3676136IPR003657WRKY domain
PROSITE profilePS5081132.45577137IPR003657WRKY domain
PfamPF031067.8E-2678135IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MEASLSDLYS NVNTYHLEDR EISSDNSGDN SPSTTTFNAA SISSPKRSRR AIQKKVVTFP  60
IKEIEGSRFK GDCTPPSDSW AWRKYGQKPI KGSPYPRGYY RCSSSKGCPA RKQVERSRSD  120
PNTLVVTYSY EHNHPWPITR NHHHQNRHNN AASATSIENT TATTTATATT SLVIPSTTIT  180
TNNTSTTTTN EKSHHKTESH DIMHDDHNNN NNILFQQNIE EALINPTDEL TWFSSDDQIL  240
ENNSFFSNLS DLDMAKIFPM REEDESLFAD LGELPECSVV FRKAAGVVGG EECSLAPTTW  300
CGTTG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-1954137679Disease resistance protein RRS1
5w3x_D1e-1954137679Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010686240.10.0PREDICTED: probable WRKY transcription factor 65 isoform X1
TrEMBLA0A0K9RTN91e-143A0A0K9RTN9_SPIOL; Uncharacterized protein
STRINGXP_010686240.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.11e-59WRKY DNA-binding protein 65