PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv7_179460_yqtj.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | NAC | ||||||||
Protein Properties | Length: 254aa MW: 29313.3 Da PI: 5.7008 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 89.3 | 6.9e-28 | 33 | 160 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 p G+rF+P d+el+ +yL +k++g+kl+ + ++ v++y+++P+ L ++++a + k wyfF++ ++++++ r+++ ++g Wk tg++++ Bv7_179460_yqtj.t1 33 PSGYRFEPLDQELILDYLVPKLKGHKLPR-HLMHPVNLYDHDPEYLSANYEAqGPKTWYFFTSMNTSSRNRYRSSKN-ENGWWKLTGQTTT 121 89************************999.88**************95544426679**********9999999996.78*********** PP NAM 92 vlskkgelvglkktLvf..ykgrapkgektdWvmheyrl 128 +++ ++e++g ++ L f y ++ +t+W++he+++ Bv7_179460_yqtj.t1 122 IKNDDDEVIGSRRKLFFnfYLPKEGGDDNTRWIVHEFEV 160 **********9999875116667777789********86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.36E-31 | 27 | 187 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 32.092 | 32 | 188 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.1E-16 | 33 | 159 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MKQPDENDAS SISSCNKPEN DTVSNSKYFK TFPSGYRFEP LDQELILDYL VPKLKGHKLP 60 RHLMHPVNLY DHDPEYLSAN YEAQGPKTWY FFTSMNTSSR NRYRSSKNEN GWWKLTGQTT 120 TIKNDDDEVI GSRRKLFFNF YLPKEGGDDN TRWIVHEFEV QGKCKLPQDQ KNQTEEKMDH 180 VLCKLFKITT RSSTKSKGQK EEKSSPEKEQ DIDLKSDCSV DLNANGNDND NDNDNVNGNE 240 EGSGKRPILP DLNN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-18 | 31 | 187 | 16 | 164 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-18 | 31 | 187 | 16 | 164 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-18 | 31 | 187 | 16 | 164 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-18 | 31 | 187 | 16 | 164 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-18 | 31 | 187 | 19 | 167 | NAC domain-containing protein 19 |
3swm_B | 6e-18 | 31 | 187 | 19 | 167 | NAC domain-containing protein 19 |
3swm_C | 6e-18 | 31 | 187 | 19 | 167 | NAC domain-containing protein 19 |
3swm_D | 6e-18 | 31 | 187 | 19 | 167 | NAC domain-containing protein 19 |
3swp_A | 6e-18 | 31 | 187 | 19 | 167 | NAC domain-containing protein 19 |
3swp_B | 6e-18 | 31 | 187 | 19 | 167 | NAC domain-containing protein 19 |
3swp_C | 6e-18 | 31 | 187 | 19 | 167 | NAC domain-containing protein 19 |
3swp_D | 6e-18 | 31 | 187 | 19 | 167 | NAC domain-containing protein 19 |
4dul_A | 5e-18 | 31 | 187 | 16 | 164 | NAC domain-containing protein 19 |
4dul_B | 5e-18 | 31 | 187 | 16 | 164 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010696352.2 | 0.0 | PREDICTED: NAC domain-containing protein 35 | ||||
TrEMBL | A0A0J8BAM4 | 0.0 | A0A0J8BAM4_BETVU; Uncharacterized protein | ||||
STRING | XP_010696352.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15500.1 | 2e-19 | NAC domain containing protein 3 |