PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv7_179220_afmk.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C2H2
Protein Properties Length: 340aa    MW: 37135.8 Da    PI: 7.9506
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv7_179220_afmk.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.00019121143123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+C+ C+ksFs+   L  H  +H
  Bv7_179220_afmk.t1 121 YECKTCNKSFSSFQALGGHRASH 143
                         99**********99999998887 PP
2zf-C2H213.60.00019218240123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++Cg  Fs+   L  H+r+H
  Bv7_179220_afmk.t1 218 HECGICGAEFSSGQALGGHMRRH 240
                         78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.64E-6119148No hitNo description
PROSITE profilePS5015712.528121148IPR007087Zinc finger, C2H2
SMARTSM003550.041121143IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.7E-4121148IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.4E-12121145IPR007087Zinc finger, C2H2
PROSITE patternPS000280123143IPR007087Zinc finger, C2H2
SuperFamilySSF576672.85E-5215241No hitNo description
PfamPF139121.3E-11217242IPR007087Zinc finger, C2H2
SMARTSM003550.048218240IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.411218240IPR007087Zinc finger, C2H2
PROSITE patternPS000280220240IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MVAQQEEVIV GDQQQIKHNN NSNMMMMIKG KRTKRSRSRP LSPLALTMSS ATTNDEGGAN  60
SATSPPHSAA TSEEEEDMAH CLILLAQGSN QLSSNSNNNH NNNNNNSNNQ KGIIGVSTTS  120
YECKTCNKSF SSFQALGGHR ASHKKPKPNL VALSDLKKSS TSSSSSASVI FSLLNQHHHH  180
NHHEDDTTLS LQISNSSLST NNAYTNNTTT NNKATKVHEC GICGAEFSSG QALGGHMRRH  240
RPIGMTPASL AAIDIANNNN NNNNNNNNVK EKMMITTPTT RNDLLSLDLN LPAPEDELQQ  300
QQQQQQQQQQ QRDLSSKFVF PSNEKTLVFS AASQLVDCHY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13338KRSRSR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7739411e-85KF773941.1 Beta vulgaris microsatellite SSR-Unigene17623 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010696311.10.0PREDICTED: zinc finger protein ZAT5
TrEMBLA0A0J8B7U10.0A0A0J8B7U1_BETVU; Uncharacterized protein
STRINGXP_010696311.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.11e-43C2H2 family protein