PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv7_173680_dqmt.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family GRAS
Protein Properties Length: 752aa    MW: 84206.6 Da    PI: 5.4689
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv7_173680_dqmt.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS366.92.7e-1123797491373
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l++lL+ cA+  +s+d + a++lL++++e++s  gd  qRla+yf++AL++rla+++s++y al++++ts    ++ ++a+++f  ++P+ 
  Bv7_173680_dqmt.t1 379 LRSLLILCAQSTASDDRRTADELLKQIREHSSAGGDGSQRLAHYFANALESRLAGTGSQIYTALNSKRTS---AADMIKAYQFFIRTCPFK 466
                         6899***************************************************************999...9***************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                         k+s   aN++Il+a+e+++++H+iDf+i +G+QWp L+q L++R +gpp+l iTg++ p++g   +e++e+tg+rLak++e+++vpfe+++
  Bv7_173680_dqmt.t1 467 KISIGCANHMILKAAEKCSKLHVIDFGILYGFQWPVLIQRLSERLGGPPKLCITGIDLPQPGfrPAERVEATGHRLAKYCERFKVPFEYHA 557
                         *************************************************************9***************************** PP

                GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                          va+++e++++e+L++k++E+++Vn+ ++ ++llde+  ++s+r++vL+l+++++P+++++   + ++n++ F++rf eal +ys+lfd++
  Bv7_173680_dqmt.t1 558 -VAQKWETIRVEDLKIKNDEVVVVNCLYRFKNLLDETIVVDSPRNAVLNLIRKIKPTMFILGVVNGSYNAPFFVTRFREALFHYSTLFDMF 647
                         .7***************************************************************************************** PP

                GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                         +++++r++ er + E+e+ grei+nvvaceg+er+er et+++W+ r ++aGF++ p++++  ++ ++ ++  + + + ++ +  ++++gW
  Bv7_173680_dqmt.t1 648 DTNASRDDPERFMFEKEFYGREIMNVVACEGTERIERPETYKQWQVRNNRAGFRQFPFDQDLINKLRCKVKANYHRDFVIDVDGYWALQGW 738
                         **************************************************************************999************** PP

                GRAS 363 kdrpLvsvSaW 373
                         k+r   ++SaW
  Bv7_173680_dqmt.t1 739 KGRITNAISAW 749
                         *********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.69353730IPR005202Transcription factor GRAS
PfamPF035149.3E-110379749IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 752 aa     Download sequence    Send to blast
MGSQFGEFPE NFVNGSEPVN EIMSPGYDES LNYANLFNYK DPSQDLTSLN FPSPLANPIL  60
PNLSSFSGAS EGVELSDDSD SDDVLKYISQ MLMEEDMEQK PCMFHDSLAL QAAEKPFYDA  120
LGRNYPSSPK QHPLIDHSVD SPDDNSWSSP SDSSGSSCSS SSISTNSVDP TMVADLSDHS  180
KPLVTQARTI SSYSQPSNFS HWSFGSSSSV GGTTSNDLMM SSLGFPMGMD LFSDKESIIQ  240
FQKGMEEASK FLPKNNNIFI DLENINVPNE AKCDASAVVV KKETGDNSPD ESRGSKIHYR  300
EDENIEEGRS SKQSAISIEE EAELSELFDR VLLCPPSTHE AHCTMGLDSK KGSTLQASQP  360
QGGKGRPRKQ VNSKNVVDLR SLLILCAQST ASDDRRTADE LLKQIREHSS AGGDGSQRLA  420
HYFANALESR LAGTGSQIYT ALNSKRTSAA DMIKAYQFFI RTCPFKKISI GCANHMILKA  480
AEKCSKLHVI DFGILYGFQW PVLIQRLSER LGGPPKLCIT GIDLPQPGFR PAERVEATGH  540
RLAKYCERFK VPFEYHAVAQ KWETIRVEDL KIKNDEVVVV NCLYRFKNLL DETIVVDSPR  600
NAVLNLIRKI KPTMFILGVV NGSYNAPFFV TRFREALFHY STLFDMFDTN ASRDDPERFM  660
FEKEFYGREI MNVVACEGTE RIERPETYKQ WQVRNNRAGF RQFPFDQDLI NKLRCKVKAN  720
YHRDFVIDVD GYWALQGWKG RITNAISAWV PA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-493837498374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010685736.10.0PREDICTED: scarecrow-like protein 33
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A0K9RLR30.0A0A0K9RLR3_SPIOL; Uncharacterized protein
STRINGXP_010685736.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]