PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv7_170030_eqzo.t2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | GRF | ||||||||
Protein Properties | Length: 223aa MW: 25460.7 Da PI: 9.7622 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 74.5 | 1.2e-23 | 83 | 125 | 1 | 43 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrksk 43 d+epgrCrRtDGKkWRCs+++ +++k+CE+H+hrg+++++k+ Bv7_170030_eqzo.t2 83 DPEPGRCRRTDGKKWRCSKEAFPDSKYCEKHMHRGKNKTKKHI 125 79**************************************985 PP | |||||||
2 | QLQ | 47 | 7.9e-17 | 15 | 45 | 2 | 32 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLl 32 +FTa+Q+ +L++Q+l +KyL++++PvPp+L Bv7_170030_eqzo.t2 15 PFTASQWKELEQQLLTFKYLISGVPVPPQLF 45 8****************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 3.2E-8 | 14 | 50 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 8.7E-12 | 15 | 45 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 17.312 | 15 | 50 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 23.177 | 83 | 127 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.9E-19 | 84 | 124 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MMILDDRNNK RSPFPFTASQ WKELEQQLLT FKYLISGVPV PPQLFSNVIT NPFASSSSTL 60 FPYQQSLPFG WGCFQVGYGR KIDPEPGRCR RTDGKKWRCS KEAFPDSKYC EKHMHRGKNK 120 TKKHIQVFST TPPKTTTTNT IIPTTPSTTN KPYLSSPVIS SSVSPSYINQ LHSYDHTTSF 180 YPFLSPQSSS FSTHFTESTQ NVTAPHWLLD TQLYDDQPKK DMS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Acts together with GIF1 for the development of appropriate leaf size and shape through the promotion and/or maintenance of cell proliferation activity in leaf primordia. {ECO:0000269|PubMed:15326298, ECO:0000269|PubMed:15960617}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010685313.1 | 1e-165 | PREDICTED: growth-regulating factor 5 isoform X1 | ||||
Refseq | XP_010685314.1 | 1e-165 | PREDICTED: growth-regulating factor 5 isoform X2 | ||||
Swissprot | Q8L8A6 | 3e-47 | GRF5_ARATH; Growth-regulating factor 5 | ||||
TrEMBL | A0A0K9RH58 | 2e-70 | A0A0K9RH58_SPIOL; Uncharacterized protein | ||||
STRING | XP_010685313.1 | 1e-164 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 2e-48 | growth-regulating factor 5 |