PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv7_170030_eqzo.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

GRF

Protein Properties

Length: 277aa MW: 31947 Da PI: 9.7563

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv7_170030_eqzo.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	74	1.6e-23	83	125	1	43
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrksk 43 d+epgrCrRtDGKkWRCs+++ +++k+CE+H+hrg+++++k+ Bv7_170030_eqzo.t1 83 DPEPGRCRRTDGKKWRCSKEAFPDSKYCEKHMHRGKNKTKKHI 125 79**************************************985 PP
2	QLQ	46.5	1.1e-16	15	45	2	32
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLl 32 +FTa+Q+ +L++Q+l +KyL++++PvPp+L Bv7_170030_eqzo.t1 15 PFTASQWKELEQQLLTFKYLISGVPVPPQLF 45 8****************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	3.2E-8	14	50	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	17.312	15	50	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	1.2E-11	15	45	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	23.177	83	127	IPR014977	WRC domain
Pfam	PF08879	2.6E-19	84	124	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MMILDDRNNK RSPFPFTASQ WKELEQQLLT FKYLISGVPV PPQLFSNVIT NPFASSSSTL 60 FPYQQSLPFG WGCFQVGYGR KIDPEPGRCR RTDGKKWRCS KEAFPDSKYC EKHMHRGKNK 120 TKKHIQVFST TPPKTTTTNT IIPTTPSTTN KPYLSSPVIS SSVSPSYINQ LHSYDHTTSF 180 YPFLSPQSSS FSTHFTESTQ NVTAPHWLLD TQLYDDQPKK DMRYLKEMKG AVVNEKRSSQ 240 FQDTRYNKIN KEERGERFGG VDRVDETQML FHHFLGD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010685313.1	0.0	PREDICTED: growth-regulating factor 5 isoform X1
TrEMBL	A0A0K9RH58	3e-71	A0A0K9RH58_SPIOL; Uncharacterized protein
STRING	XP_010685313.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	5e-48	growth-regulating factor 5