PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv7_163790_fzoa.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family HB-other
Protein Properties Length: 590aa    MW: 65745 Da    PI: 10.2039
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv7_163790_fzoa.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox19.61.5e-0669125157
                         TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
            Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                         +r+R  ++++ l+ ++++F  +  +s++e +e+ +  gLt +qV+ +F  +R + ++
  Bv7_163790_fzoa.t1  69 KRPRDLLNPKALKYMQAVFSIKDAISKKELREIGALFGLTVTQVREYFAGQRSRVRR 125
                         799**************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.20366126IPR001356Homeobox domain
SMARTSM003893.2E-568130IPR001356Homeobox domain
SuperFamilySSF466893.51E-768128IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.1E-669133IPR009057Homeodomain-like
CDDcd000862.92E-569125No hitNo description
SuperFamilySSF476761.57E-6225314IPR017923Transcription factor IIS, N-terminal
Gene3DG3DSA:1.20.930.101.3E-4226315IPR017923Transcription factor IIS, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009911Biological Processpositive regulation of flower development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MEVLKDYPSE IDIGNSMESF QKGMDLQKHL FHNQIDQLRN IVVTQCKLTG VNPLSQEMAA  60
GALSINIGKR PRDLLNPKAL KYMQAVFSIK DAISKKELRE IGALFGLTVT QVREYFAGQR  120
SRVRRIVRLS REKAIRTSAT KEIQDGVSAD ADLMHPIDPT PLSSIGPSNA EEVPSCSNQD  180
EVLPGLGESE RHFVENIFSS MCKEETFSGQ VKLMDWILQI ENPLILGWFL MKGGVMILAT  240
WLSQAASEEQ TSVVSAVLKV LCHLPLNKAV PAHMSAVLQG VNKLRFYRLP DISNRARVLL  300
SKWSRMFAKS QALKKPNGVR TAGGSQPDID LSGRLGELVG DGSWQSSVDD HDILALSYVG  360
PDDTRKVETL EAVKLLTASS DDTNKKLILG TSTAHNKERR KVQLVEQPGQ KAGSKSQPVK  420
AVLANQRRPI TADEIQKAKM RAQFMQSNKR KTEGPNKPSL LTNDLLSASE AYLRPKLEAQ  480
KKARLLPPKS STKQVECPSD HKPTFDQKET LLEKCRRVQI PWRAPPGTVF SSSCWISLLL  540
FKLLLVKGIH QWGVTVLRIF SNKGNNYYGH RGNSFRRETP VLELVSPLML
Functional Description ? help Back to Top
Source Description
UniProtSeems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269|PubMed:10363371}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019106372.10.0PREDICTED: homeobox protein LUMINIDEPENDENS isoform X1
SwissprotQ387961e-164LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBLA0A0K9RS100.0A0A0K9RS10_SPIOL; Uncharacterized protein
STRINGXP_010684371.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02560.21e-158HB-other family protein
Publications ? help Back to Top
  1. Chakrabortee S, et al.
    Luminidependens (LD) is an Arabidopsis protein with prion behavior.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70
    [PMID:27114519]