PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv7_160130_ygqf.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | ERF | ||||||||
Protein Properties | Length: 205aa MW: 22059.2 Da PI: 4.4508 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.3 | 1.9e-18 | 31 | 81 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 s ykGVr++k +g+Wv+eIr+p r +r++lg++ t+e+Aa a++ a+++l+g Bv7_160130_ygqf.t1 31 SSYKGVRRRK-SGKWVSEIREP-----RtpTRIWLGSYPTPEMAAVAYDVAALALRG 81 67*****999.7*********9.....559*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.05E-20 | 31 | 91 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.21E-31 | 31 | 91 | No hit | No description |
Pfam | PF00847 | 8.7E-12 | 31 | 81 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-28 | 32 | 91 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-33 | 32 | 95 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.155 | 32 | 89 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.7E-10 | 33 | 44 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.7E-10 | 71 | 91 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MSGYSNYPTT NISCSPPSNT NTGGCSNTSR SSYKGVRRRK SGKWVSEIRE PRTPTRIWLG 60 SYPTPEMAAV AYDVAALALR GPGTQLNFPE SASSLPIPHS TTPRDIQAAA ACAAAAAGAA 120 ADALNLEKRE NLGGEDDGVS DEDNNGKKSY EEHFVDEDLI FDMPNVLANM AQGMLLSPPR 180 LDVPTYLDDD DVGNSYGDHN LWNYP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-12 | 32 | 89 | 14 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 33 | 39 | KGVRRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010684005.1 | 1e-151 | PREDICTED: ethylene-responsive transcription factor ERF024 | ||||
Swissprot | Q9SJR0 | 2e-47 | ERF24_ARATH; Ethylene-responsive transcription factor ERF024 | ||||
TrEMBL | A0A0K9RLM4 | 2e-72 | A0A0K9RLM4_SPIOL; Uncharacterized protein | ||||
STRING | XP_010684005.1 | 1e-150 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36450.1 | 6e-39 | ERF family protein |