PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv6_153930_sesx.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

ZF-HD

Protein Properties

Length: 343aa MW: 36654.2 Da PI: 8.2987

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv6_153930_sesx.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	103.7	1.2e-32	48	105	2	58
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 ++v YkeClkNhAas+Ggha+DGC+Efmp ++++ ++++l+CaACgCHRnFHRr+++ Bv6_153930_sesx.t1 48 QHVSYKECLKNHAASIGGHALDGCCEFMPGPTANpLDPTSLTCAACGCHRNFHRRDPD 105 6799***************************999*****************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	3.1E-27	50	104	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.68	52	103	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	7.0E-29	52	103	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	5.0E-20	52	102	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	7.17E-17	194	266	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.2E-26	196	267	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	5.0E-24	208	264	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MAMDFITGPT TATTTAPRTP DSDTDTPPYP PPTKRPHHHH NNYNNDNQHV SYKECLKNHA 60 ASIGGHALDG CCEFMPGPTA NPLDPTSLTC AACGCHRNFH RRDPDDPTPL HHLIPLTSAR 120 RPHSPPSASQ LLLSLSGHTQ SPSAPSDHEV IMHNNPTAGV PPCGGGSGGG GGGGGVVVGY 180 YHHHHHQHNN GGSGGGGGGG QNGNFQSKKR YRTKFSQEQK EKMYEFSEKI GWKLKKGEER 240 LVEDFCKQIC VDRTVFKVWM HNNKHSSTTS SAATPPSSSA SKRDKFGIII NNNSANNNTN 300 TNNTPNNNNN NVSSSSSLNC GGVLATALDF NFANGAAQEA KAQ

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MAMDFITGPT TATTTAPRTP DSDTDTPPYP PPTKRPHHHH NNYNNDNQHV SYKECLKNHA  60
ASIGGHALDG CCEFMPGPTA NPLDPTSLTC AACGCHRNFH RRDPDDPTPL HHLIPLTSAR  120
RPHSPPSASQ LLLSLSGHTQ SPSAPSDHEV IMHNNPTAGV PPCGGGSGGG GGGGGVVVGY  180
YHHHHHQHNN GGSGGGGGGG QNGNFQSKKR YRTKFSQEQK EKMYEFSEKI GWKLKKGEER  240
LVEDFCKQIC VDRTVFKVWM HNNKHSSTTS SAATPPSSSA SKRDKFGIII NNNSANNNTN  300
TNNTPNNNNN NVSSSSSLNC GGVLATALDF NFANGAAQEA KAQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh5_A	2e-18	208	270	17	79	ZF-HD homeobox family protein
1wh7_A	1e-18	207	270	16	79	ZF-HD homeobox family protein
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010683186.1	0.0	PREDICTED: zinc-finger homeodomain protein 8
TrEMBL	A0A0K9RTK1	1e-122	A0A0K9RTK1_SPIOL; Uncharacterized protein
STRING	XP_010683186.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15210.1	1e-27	homeobox protein 30