PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_152140_jnrj.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family CO-like
Protein Properties Length: 330aa    MW: 37032.2 Da    PI: 4.2957
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_152140_jnrj.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box171.3e-05442537
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                         C+ + ++ + l+Ce ++  lC  C   +H+       H
  Bv6_152140_jnrj.t1  4 ECDYCCKNAAVLYCEADSANLCLLCDRDIHSAnslslkH 42
                        7*****999*********************655555555 PP
2CCT63.46.9e-22278321144
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                         R +a+lRYkeK+ktR+++K+irYesRKa+A+ R+RvKGrFvk++
  Bv6_152140_jnrj.t1 278 RGKAMLRYKEKKKTRRYDKHIRYESRKARADIRQRVKGRFVKAS 321
                         7789**************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.428147IPR000315B-box-type zinc finger
SMARTSM003361.3E-6147IPR000315B-box-type zinc finger
CDDcd000211.07E-7535No hitNo description
PfamPF062038.0E-16278320IPR010402CCT domain
PROSITE profilePS5101714.634278320IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MKLECDYCCK NAAVLYCEAD SANLCLLCDR DIHSANSLSL KHIRIPRFGI SNPNSEPKSA  60
IDGCPSASEL APFWGINDLV VPCLGDDEKD AVIQQLVKLS KWDLEEREYS SEIGPGTPSL  120
DAGEGDGSEL LFQNTNFTSL LMKEGETVSV EDRDFMWDFD ADYQPPQEWD GQCGRPFDLD  180
LEESSCASPR VSGDVCEMQC SNILEGSESR DDGGNQTVDN DIFVTLENCS VPSIGLSSDA  240
EMIKPEAIDG EQNFQVMEWP YWRKPLGNTD MEQLAENRGK AMLRYKEKKK TRRYDKHIRY  300
ESRKARADIR QRVKGRFVKA SDTPDEGSGF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU4377840.0EU437784.1 Beta vulgaris subsp. vulgaris COL3 (COL3) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010682991.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 14 isoform X2
TrEMBLB3TZZ90.0B3TZZ9_BETVU; COL3
STRINGXP_010682992.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.23e-35B-box type zinc finger protein with CCT domain