PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_149970_dkfq.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family CO-like
Protein Properties Length: 516aa    MW: 57633.2 Da    PI: 5.9696
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_149970_dkfq.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.67.9e-062160437
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                        + C+ ++e   +l+C  ++  lC  C +  H+       H
  Bv6_149970_dkfq.t1 21 TPCDFCNEDTSILYCSADEAKLCLLCDQLVHSAnslsqkH 60
                        68******99******************999555666666 PP
2CCT63.37.6e-22468511144
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                         R +a++RYkeK+ktR++eK+irYesRKa+A++R+RvKGrFvk +
  Bv6_149970_dkfq.t1 468 RGNAMQRYKEKKKTRRYEKHIRYESRKARADTRKRVKGRFVKIN 511
                         7789*************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.4E-81865IPR000315B-box-type zinc finger
PROSITE profilePS501199.6411865IPR000315B-box-type zinc finger
CDDcd000213.69E-62365No hitNo description
CDDcd000213.24E-464110No hitNo description
SMARTSM003363.966110IPR000315B-box-type zinc finger
PfamPF062035.8E-16468509IPR010402CCT domain
PROSITE profilePS5101714.723468510IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MGVPQEHTTP TTAATTTATP TPCDFCNEDT SILYCSADEA KLCLLCDQLV HSANSLSQKH  60
LRSPLCDTCG SQPATIHCFS HTLFLCHQCD YNLHNNNNNF TTSHHHRSSI HPLSGCPTPH  120
NISSFLGIDL ATFNKTPDSL SDLMVPGHHN NNNVGPTLYP WGLHDDDYDN NNNNNNNNNN  180
KCCNGKKQQA LVKQLSQMLQ MSQMQKKCDT NNNTNNNNGG GDEGRENSIV PDDDDIIFEL  240
HNHNNNVTSN YNTIYDDYQN QSILFQCLYQ QQQQEEKEEE EVNFSSFMSL TVPNNNNNNN  300
NNMNNVVGPP SAANVMWDSS PPNPTIQIWD FNSGRMRDQD ESGKLDVSYP ENDVGFIINS  360
YSSLIQDTGL ASSKVLGEMY DMNSSNTQED IGIFNSNIQN PAASQGPATS ESNNMPVIRP  420
ASNSVFGKPK SLGSSDIHFM EQSLFLGGEH ALSAVRTKAD IEMLAQNRGN AMQRYKEKKK  480
TRRYEKHIRY ESRKARADTR KRVKGRFVKI NESSSG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010682677.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 15
TrEMBLA0A0K9RZ571e-153A0A0K9RZ57_SPIOL; Uncharacterized protein
STRINGXP_010682677.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28050.18e-30B-box type zinc finger protein with CCT domain