PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_147690_mghj.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ARR-B
Protein Properties Length: 628aa    MW: 70778.8 Da    PI: 5.3103
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_147690_mghj.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like78.96e-25192247155
             G2-like   1 kprlrWtpeLHerFveaveqLG.GsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         k+r++Wt eLH++Fveav+qLG  s+k  Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  Bv6_147690_mghj.t1 192 KARVVWTVELHQKFVEAVNQLGiDSDKIGPKKILDLMNVPRLTRENVASHLQKYRL 247
                         68*******************7447899***************************8 PP
2Response_reg78.91.8e-26211291109
                         EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS
        Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 
                         vl+vdD+p+ +++l+++l+k +y ev++   ++eal+ll++++  +D+++ D++mp+m+G++ll++   e  +lp+i+++  ge + + + 
  Bv6_147690_mghj.t1  21 VLVVDDDPTWLKILEKMLKKCNY-EVTTSGLAREALKLLRDRKdgFDIVISDVNMPDMNGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKG 109
                         89*********************.***************888889**********************6644.8****************** PP

                         HHTTESEEEESS--HHHHHH CS
        Response_reg  90 lkaGakdflsKpfdpeelvk 109
                         ++ Ga d+l Kp+ ++el +
  Bv6_147690_mghj.t1 110 VQHGACDYLLKPIRMKELKN 129
                         ****************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.5E-1441588IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23004.3E-4318142No hitNo description
SuperFamilySSF521725.41E-3518142IPR011006CheY-like superfamily
SMARTSM004487.0E-3119131IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.3120135IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.4E-2321129IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.33E-2922134No hitNo description
SuperFamilySSF466894.03E-18190251IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-28190252IPR009057Homeodomain-like
TIGRFAMsTIGR015575.7E-22192247IPR006447Myb domain, plants
PfamPF002496.6E-8194246IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 628 aa     Download sequence    Send to blast
MIMENGFSSP RSEPFPAGLR VLVVDDDPTW LKILEKMLKK CNYEVTTSGL AREALKLLRD  60
RKDGFDIVIS DVNMPDMNGF KLLEHVGLEM DLPVIMMSVD GETSRVMKGV QHGACDYLLK  120
PIRMKELKNI WQHVVRKRMH EVRDIECIED RSGIDHFHDG HYGGDHTFLK KRKDLDNKHD  180
DKDSNDPSAT KKARVVWTVE LHQKFVEAVN QLGIDSDKIG PKKILDLMNV PRLTRENVAS  240
HLQKYRLYLS RIRKEDKMES SCGETKNPDY SPKESSGSFS LQNSSFGQQN DITSKYVYQE  300
NQLPVQTADS KTFDNDLGSS KYLTEHRIPF STENSDSHTS RNSQIGLNHT YGSIDTSIKH  360
SSFDSTVAGR YPWSAEIPDL KFELEYKPHL QLENNLDQPA APIMQQHIIP DLIEPAPHVS  420
ADLLEPAPQC THTSPGPSIS ETNLGLIDIK PLIAKEGGHD IKGLSPMEST LGSFSVSNDD  480
ACGCAFDMKN QNFSQGVNNI TKEPPLLERS FQTFPVQSGS HLMDAHGLDP SFNVTLQMEK  540
QISCQSSVPG SELDLRNQVL KSESASELLR EDLMFRLLQY GDCTSKDFGL GFSLPEHESV  600
LPLYMPKLDY ENSFDWGEYP PDQGLLFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-18188252163ARR10-B
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010682390.10.0PREDICTED: two-component response regulator ARR11 isoform X1
TrEMBLA0A0K9QRY80.0A0A0K9QRY8_SPIOL; Two-component response regulator
STRINGXP_010682390.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-118response regulator 11