PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_144010_ryau.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family GRAS
Protein Properties Length: 609aa    MW: 66816.2 Da    PI: 5.2712
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_144010_ryau.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4424.1e-1352456001374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         lv++L++cAe + +++l la+alL+++  la++++ +m+++a+yf+eALa+r+++        l p +++    s+ l++   f+e++P+l
  Bv6_144010_ryau.t1 245 LVHTLMACAESIVQENLGLAEALLKQIGFLAASQAGSMRKVATYFAEALARRVYK--------LCPYDDN---YSDMLQM--HFYETCPYL 322
                         689***************************************************9........4455554...5666555..5******** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                         kf+h+taNqaIlea++g+++vH+iDf++++G+QWpaL+qaLa Rpegpp +R+Tg+g+p+++++++l+e+g++La+fA++++++fe++ +v
  Bv6_144010_ryau.t1 323 KFAHFTANQAILEAFSGKKKVHVIDFSMKEGMQWPALMQALALRPEGPPAFRLTGIGPPAPDNTDRLQEVGWKLAQFADSIQIQFEYRGFV 413
                         ******************************************************************************************* PP

                GRAS 183 akrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
                         a++l+dle + L+++p  E++aVn+v++lhrl+++++++e+    vL l+k+++P +v+vveqea+hn++ Fl+rf e+l+yys+lfdsle
  Bv6_144010_ryau.t1 414 ANSLTDLESSLLDLRPeSEVVAVNSVFELHRLMARPGAVEK----VLGLMKEVKPVIVTVVEQEANHNGPAFLDRFNESLHYYSTLFDSLE 500
                         ****************9***********************9....********************************************** PP

                GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgW 362
                         + +   +++++ +++++lgr+i+nvvaceg +r+erhetl++Wr+r+++aGF+pv+++++a kqa++ll  ++ +dgy vee++g+l+lgW
  Bv6_144010_ryau.t1 501 SCV---DSQDKLMSEVYLGRQICNVVACEGVDRVERHETLAQWRNRFNSAGFTPVHIGSNAFKQASMLLDFFAgGDGYGVEENDGCLMLGW 588
                         **7...88899999999************************************************************************** PP

                GRAS 363 kdrpLvsvSaWr 374
                         ++rpL+++SaW+
  Bv6_144010_ryau.t1 589 HSRPLITTSAWQ 600
                         ***********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011292.3E-3440113No hitNo description
PfamPF120411.1E-3440107IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098566.035219579IPR005202Transcription factor GRAS
PfamPF035141.4E-132245600IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0042176Biological Processregulation of protein catabolic process
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MKREHPLTNS EPPVTGKPAS AVTGKSKMWE DGAQNDAGVD ELLAVLGYKV RSSDMAEVAN  60
KLEQLEEYMG NVRGDGLCQL ASETVHYNPS DLSTWLESML SEFNPSTNFD PSPPSIGSII  120
DPIVNPSQKT VVKFEQGFND PFSDYDLKAI PGKAILTPPS QSQNQSCSSS MLVNNSNNNN  180
NNSSNSLVST TTSSSSSREA KRMKSSNYGT ATATATATAT AAKLANSAVS RPVVRVDSQE  240
NGVRLVHTLM ACAESIVQEN LGLAEALLKQ IGFLAASQAG SMRKVATYFA EALARRVYKL  300
CPYDDNYSDM LQMHFYETCP YLKFAHFTAN QAILEAFSGK KKVHVIDFSM KEGMQWPALM  360
QALALRPEGP PAFRLTGIGP PAPDNTDRLQ EVGWKLAQFA DSIQIQFEYR GFVANSLTDL  420
ESSLLDLRPE SEVVAVNSVF ELHRLMARPG AVEKVLGLMK EVKPVIVTVV EQEANHNGPA  480
FLDRFNESLH YYSTLFDSLE SCVDSQDKLM SEVYLGRQIC NVVACEGVDR VERHETLAQW  540
RNRFNSAGFT PVHIGSNAFK QASMLLDFFA GGDGYGVEEN DGCLMLGWHS RPLITTSAWQ  600
LANNSPTHR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-632335997378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00611ChIP-seqTransfer from AT2G01570Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010681882.10.0PREDICTED: DELLA protein GAI
SwissprotQ8S4W70.0GAI1_VITVI; DELLA protein GAI1
TrEMBLA0A0J8EXX90.0A0A0J8EXX9_BETVU; Uncharacterized protein
STRINGXP_010681882.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein