PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_143120_ztqc.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C3H
Protein Properties Length: 335aa    MW: 37515.2 Da    PI: 7.8229
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_143120_ztqc.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH43.45.6e-14258283126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         yktelC+ +++tG C yGd C+FaHg
  Bv6_143120_ztqc.t1 258 YKTELCNKWQETGSCLYGDHCQFAHG 283
                         9************************8 PP
2zf-CCCH18.14.8e-06296320125
                         --S---SGGGGTS--TTTTT-SS-S CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                         ykte Cr  +++  C+yG rC+F H
  Bv6_143120_ztqc.t1 296 YKTEVCRMVLAGEPCPYGHRCHFRH 320
                         9**********66**********88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.4E-17252290IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-11254289IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-8257284IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.854257285IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-10258283IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-8291324IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-11291321IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-4295322IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.141295323IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MQQDAMNSTM TMNQISSTSQ IRTSVADIFN PPPYSSIFFH STPSPTPFAA HPVTSDEKCT  60
RNTASATAAA AKSLSRMMSE HKELLSRHAF CLTHLRKTFK EAETLRQENT NLRLANVELS  120
KHVNFLIQIT SQSQYQTQPF TENFGGDFEM EKDSEGWDEG FSAKNQSPTS EIEKDEEENQ  180
KDDAARVTLP KSISVRSNGF LKMSQTGGGP SGSNSGALRA ATRIRPPNPV TGPHKVYVRG  240
GSKKVGPIEL EVYNQGMYKT ELCNKWQETG SCLYGDHCQF AHGIDQLRPV IRHPRYKTEV  300
CRMVLAGEPC PYGHRCHFRH ALTDEEKLML PLRLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A4e-20258320466Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010681714.10.0PREDICTED: zinc finger CCCH domain-containing protein 15
SwissprotQ9C9F51e-70C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A0K9QNV41e-161A0A0K9QNV4_SPIOL; Uncharacterized protein
STRINGXP_010681714.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.11e-69C3H family protein