PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_138940_rurs.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ZF-HD
Protein Properties Length: 284aa    MW: 32110.6 Da    PI: 6.9002
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_138940_rurs.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer105.53.3e-334599257
         ZF-HD_dimer  2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                        ++vrY+eClkNhA+ +GghavDGCgEfmp+ g+eg+++al+CaAC+CHRnFHR+e+
  Bv6_138940_rurs.t1 45 TTVRYRECLKNHAVGIGGHAVDGCGEFMPA-GTEGSIDALRCAACNCHRNFHRKEN 99
                        689**************************9.999********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.3E-294799IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.7E-304898IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-234899IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.5594998IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466894.06E-19207282IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-30211283IPR009057Homeodomain-like
TIGRFAMsTIGR015655.7E-26221277IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MMEFEDEHEE EEEEEEEEQS SEMAITPTFK KNQQQQNLAT TTATTTVRYR ECLKNHAVGI  60
GGHAVDGCGE FMPAGTEGSI DALRCAACNC HRNFHRKENL PDNNVVNSSS QLTLYTPRPH  120
SHQIYQFYPY NRTTPGYLHV SGGQRPLALP SPTMNQNHHY NNQQQQQKHE EMVVGRDEVV  180
NNNNNNHGHH ISSTTTGVGE GGTMDISGGT MLSGGSNSSG KKRFRTKFTQ EQKDKMLDLA  240
EKLGWKIQKQ DELVVHQFCH ETGVKRHVLK VWMHNNKLTL GKKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-242222771873ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010681042.10.0PREDICTED: zinc-finger homeodomain protein 1
SwissprotA2Z2598e-71ZHD1_ORYSI; Zinc-finger homeodomain protein 1
SwissprotQ6YXH57e-71ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBLA0A0K9RNS53e-77A0A0K9RNS5_SPIOL; Uncharacterized protein
STRINGXP_010681042.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50890.11e-33homeobox protein 28
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]