PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_138090_jcer.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family TALE
Protein Properties Length: 817aa    MW: 88988.1 Da    PI: 7.3267
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_138090_jcer.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.33e-095906271954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  Bv6_138090_jcer.t1 590 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 627
                         554459******************************88 PP
2BELL119.81.2e-38450521172
                BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         +r e+q++k+kLl +l+eVd+rY++y+eq+q+v++sF+ v+g+g+a pYt+lA+ka+SrhFrcLkdai  q+
  Bv6_138090_jcer.t1 450 DRIEHQRRKVKLLAMLDEVDRRYNHYCEQMQMVVNSFDLVMGYGAAIPYTALAQKAMSRHFRCLKDAIQVQL 521
                         589*****************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.6E-76374519IPR006563POX domain
PfamPF075262.3E-51379517IPR006563POX domain
PROSITE profilePS5007112.6568631IPR001356Homeobox domain
SMARTSM003896.7E-10571635IPR001356Homeobox domain
CDDcd000864.51E-13571632No hitNo description
SuperFamilySSF466894.6E-17573638IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.9E-29574637IPR009057Homeodomain-like
PfamPF059204.2E-18588627IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 817 aa     Download sequence    Send to blast
MGIAQPAPPV CSSSSNKKEN TTIISRPIIG KSNNNNSTNS MSHEYHHPHN HHHQQQQPAN  60
IFTFSNGFDR SAGLAQQTDQ ATAAEDTAGD LHHPVVYESA GMLSEMFNFG QGPGVGPTPG  120
PELLDYRRAV AGTGIGPADW YGHNRQVSRD NQHHHMEDQN QHQHQQHQQH HQMGGSISVH  180
DSAAAMQLFL TNPQPRSPSP PPPPEAAQPN IQPGGGGGFH SLAAVGVVHH PSSTTTNNTS  240
STTNHHPNFW SAPHHINNPP ELSGIVEGQG LSLSLSSSLQ HLEAAKQAEE EFRNIGGGGP  300
TGDTHIMFFN QHQTNATGVG PSTSNTTTST GNHFFKNLAP SPHHLQPVGA FGGPNNAQNQ  360
VHIGYGSAAA SSSLGVVNVL RNSKYAKPAQ DLLEEFCSVG RGQLKKPKLG RQNSSNQNPT  420
MSGSGGGGGG GGGAGSSSST KDPPQLSPSD RIEHQRRKVK LLAMLDEVDR RYNHYCEQMQ  480
MVVNSFDLVM GYGAAIPYTA LAQKAMSRHF RCLKDAIQVQ LKHSCEVLGE KDPTTSLGIT  540
KGETPRLKVL EQSLRQQRAF HQMGMMDQEA WRPQRGLPER SVNVLRAWLF EHFLHPYPSD  600
ADKHLLARQT GLSRNQVSNW FINARVRLWK PMIEEMYQQE AKEREEERER EREREGNQTS  660
SSTSNSFATQ QQQQQQQQQQ QQQQQAASAQ NPISSAVAVT VAASTSVLSE GKRSADTMTP  720
PLVGPPPDRD TSILEFNRQH HHQHHHPPPP HSVTVPPSGS QDFLDDTCHF SPDNVGPTTM  780
IRFGTTTGDV SLTLGLRHAG NAPEKGAAFS VRDFGSC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A3e-16577635563Homeobox protein Meis2
3k2a_B3e-16577635563Homeobox protein Meis2
4xrm_A4e-16577635563Homeobox protein Meis2
4xrm_B4e-16577635563Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010680937.10.0PREDICTED: BEL1-like homeodomain protein 4
TrEMBLA0A0K9RS330.0A0A0K9RS33_SPIOL; Uncharacterized protein
STRINGXP_010680937.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23760.31e-139BEL1-like homeodomain 4