PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv6_137660_fwms.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

C2H2

Protein Properties

Length: 559aa MW: 58440.2 Da PI: 8.3472

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv6_137660_fwms.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17	1.6e-05	68	90	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Bv6_137660_fwms.t1 68 FVCEICNKGFQRDQNLQLHRRGH 90 89*******************88 PP
2	zf-C2H2	12.2	0.00054	144	166	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + Bv6_137660_fwms.t1 144 WKCDKCSKKYAVQSDWKAHTKIC 166 58*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.9E-5	67	90	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.81E-7	67	90	No hit	No description
SMART	SM00355	0.017	68	90	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.949	68	90	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	70	90	IPR007087	Zinc finger, C2H2
SMART	SM00355	270	109	139	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	8.2E-4	132	165	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.81E-7	139	164	No hit	No description
SMART	SM00355	140	144	164	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009937	Biological Process	regulation of gibberellic acid mediated signaling pathway
GO:0010029	Biological Process	regulation of seed germination
GO:0010431	Biological Process	seed maturation
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 559 aa Download sequence Send to blast
MPADLDDSSP KTMSNNTASG EASVSSSGDQ IEPLKPPPKK KRNQPGMPDP DAEVIALSPK 60 TLMATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLRQRS SKEVKKRVYV CPEISCVHHD 120 PSRALGDLTG IKKHFCRKHG EKKWKCDKCS KKYAVQSDWK AHTKICGTRE YKCDCGTLFS 180 RRDSFITHRA FCDALAEETA RNPRSSGNNS NNSKMDVDTK IVTGGIASPP APPTLSPVSQ 240 QMPPPSPVPA PLQSPATPSQ PQSPLAMGPA MQPPLTMASP TNMVSSILPI QSAVQLLPEI 300 PTPVSEDVLP PVSIVASELK GSSSSCCSSS SGANTSGSSV FATLFASSST TPVSLPSHPN 360 PAFSDFIQSM ARPECPPPEL PPSVSTEPIS LCLATNHGSS IFGPAGQERR QYAPSPQPAM 420 SATALLQKAA QIGAAGSGGS LLRGLGLVSS TSSAGPSEGL QWTSRQVEPE TSPVQSGLGL 480 GLPCDEGSGL KELMIGSSSM FGPKQPTLDF LGLGMAAGGS SNGGLSALIT SMGNGLDVAA 540 AAASFGGAEF ASKDIGRSS

Sequence ? help Back to Top

Protein Sequence Length: 559 aa Download sequence Send to blast

MPADLDDSSP KTMSNNTASG EASVSSSGDQ IEPLKPPPKK KRNQPGMPDP DAEVIALSPK  60
TLMATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLRQRS SKEVKKRVYV CPEISCVHHD  120
PSRALGDLTG IKKHFCRKHG EKKWKCDKCS KKYAVQSDWK AHTKICGTRE YKCDCGTLFS  180
RRDSFITHRA FCDALAEETA RNPRSSGNNS NNSKMDVDTK IVTGGIASPP APPTLSPVSQ  240
QMPPPSPVPA PLQSPATPSQ PQSPLAMGPA MQPPLTMASP TNMVSSILPI QSAVQLLPEI  300
PTPVSEDVLP PVSIVASELK GSSSSCCSSS SGANTSGSSV FATLFASSST TPVSLPSHPN  360
PAFSDFIQSM ARPECPPPEL PPSVSTEPIS LCLATNHGSS IFGPAGQERR QYAPSPQPAM  420
SATALLQKAA QIGAAGSGGS LLRGLGLVSS TSSAGPSEGL QWTSRQVEPE TSPVQSGLGL  480
GLPCDEGSGL KELMIGSSSM FGPKQPTLDF LGLGMAAGGS SNGGLSALIT SMGNGLDVAA  540
AAASFGGAEF ASKDIGRSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	4e-36	140	209	3	72	Zinc finger protein JACKDAW
5b3h_F	4e-36	140	209	3	72	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00592	DAP	Transfer from AT5G66730	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010680830.1	0.0	PREDICTED: protein indeterminate-domain 2
Swissprot	Q9LVQ7	1e-174	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A0K9QGD0	0.0	A0A0K9QGD0_SPIOL; Uncharacterized protein
STRING	XP_010680830.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-113	C2H2-like zinc finger protein

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]