PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_135060_sszc.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family CAMTA
Protein Properties Length: 1025aa    MW: 115555 Da    PI: 7.1868
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_135060_sszc.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1179.63.8e-56141302118
                CG-1   2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 
                         l+ ++rwl++ ei++iL n+e+++++ e++++p+sgsl+L++rk++ryfrkDG+sw+kkkdgk+++E+he+LK+g+v+vl+cyYah+een+
  Bv6_135060_sszc.t1  14 LEAQHRWLRTPEICEILRNYENFNVAPEPPKKPSSGSLFLFDRKVLRYFRKDGHSWRKKKDGKSIKEAHERLKIGSVDVLHCYYAHGEENE 104
                         5669*************************************************************************************** PP

                CG-1  93 tfqrrcywlLeeelekivlvhylevk 118
                         +fqrr+yw+Leeel++ivlvhy+evk
  Bv6_135060_sszc.t1 105 NFQRRSYWMLEEELSHIVLVHYREVK 130
                         ***********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.1569135IPR005559CG-1 DNA-binding domain
SMARTSM010761.5E-7612130IPR005559CG-1 DNA-binding domain
PfamPF038593.4E-4915128IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.102.8E-6444532IPR013783Immunoglobulin-like fold
SuperFamilySSF812963.0E-17445531IPR014756Immunoglobulin E-set
PfamPF018331.9E-6445530IPR002909IPT domain
Gene3DG3DSA:1.25.40.202.3E-17622743IPR020683Ankyrin repeat-containing domain
PfamPF127961.3E-7623705IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.12E-17636739IPR020683Ankyrin repeat-containing domain
CDDcd002044.99E-14643737No hitNo description
PROSITE profilePS5029717.422645749IPR020683Ankyrin repeat-containing domain
SMARTSM002481.2E-4678707IPR002110Ankyrin repeat
PROSITE profilePS5008810.205678710IPR002110Ankyrin repeat
SMARTSM00248680717746IPR002110Ankyrin repeat
SuperFamilySSF525408.76E-11793903IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.11852874IPR000048IQ motif, EF-hand binding site
PfamPF006120.002854873IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.846854882IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0016875897IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.725876900IPR000048IQ motif, EF-hand binding site
PfamPF006121.2E-4880897IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1025 aa     Download sequence    Send to blast
MALTNQFDIE QLLLEAQHRW LRTPEICEIL RNYENFNVAP EPPKKPSSGS LFLFDRKVLR  60
YFRKDGHSWR KKKDGKSIKE AHERLKIGSV DVLHCYYAHG EENENFQRRS YWMLEEELSH  120
IVLVHYREVK GYRTNINRSK ETEEAIMNAP EVEQIICNSE ADSSMNSDLQ QNSCQMLSQN  180
TDSRSLNSGQ ASDYGDAESG SYQAKSTTSS LEIDEDRQSQ KHQKELWGWQ DVLESHNARV  240
ESASVKPSIF NGHSNSVHVI PKQENMLGKY FLTDPFRESQ AFTDPSQCPE EWQVSADNAM  300
HLGSACKMKD AITPKLHEYL ATDSMCGDGQ TMHGMGHLQT QSSVAACKKD ISDVESNLTV  360
EKKSSHFSAT GILLDRSVKD KVLNKSDSFS RWMCKELGDV EPVMLSSGAY WDADDKRNNC  420
PILPPAKLDS YTLSPSLAQE QIFRIADFAP NWSYAGSETK VLITGKFLKT HPDARKCRWS  480
CMFGEVEVPA EVIADGVLRC YAPPHGVARV PFYVTCSNRL ACSQVREFEY RNKFMHGFDM  540
TSLSNRSDVL QIRFFNLLSL GSSYCENKLL SNRDSSSDLH HEITSLLKGS NSEWFQILEL  600
SSKEESSPSG VKDRLAEKLL KEKLCEWLLC KEAEGGYGPR GLDENGQGVL HFAAALGYDW  660
AISPTIAAGV SINFRDVRGW TALHWAAYYG RERTVVYLIS LGASPGALTD PTPTYPMGRT  720
SADLASENGH KGIAGFLAES ALSAHLKCLT LKEKLKQDSA VDSPGMTSVL TASERVPTQV  780
SSGDDHGLSL KDSLAALCNA TQAAARIHQV YRSHSFKRKQ MREFGNDKME SEEYALSVIT  840
LKSHKQVHHD EPVHAAAIRI QNKFRGWKGR KEFLTLRQQI VKIQAHVRGH QVRKHYKKFV  900
WSVGIMEKAI LRWRRKRSGL RGFKSESLTV KPEFEGTSSK ADDYDFLKEG RKQAEERLQK  960
ALSRVKSMVK YPEARDQYRR LLTTVTEIKE MKDGCSGAID GPDAAASMDD DMVDLDTLLN  1020
DDTMP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010680539.10.0PREDICTED: calmodulin-binding transcription activator 3 isoform X1
TrEMBLV4S2590.0V4S259_9ROSI; Uncharacterized protein
STRINGXP_010680539.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains