PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

MYB

Protein Properties

Length: 326aa MW: 36836.8 Da PI: 6.88

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv6_135030_oypc.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.5	3.5e-19	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv+ ++++G g+W++ ++ g++R++k+c++rw +yl Bv6_135030_oypc.t1 14 KGPWTPEEDQKLVKFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	58.6	1.4e-18	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE++ ++++++ lG++ W++Ia++++ gRt++++k++w+++l Bv6_135030_oypc.t1 67 RGKFTPEEEQTILNLHAILGNK-WSAIANHLP-GRTDNEIKNFWNTHL 112 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.626	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	4.12E-33	11	108	IPR009057	Homeodomain-like
SMART	SM00717	3.9E-16	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	5.0E-18	14	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.2E-25	15	68	IPR009057	Homeodomain-like
CDD	cd00167	1.21E-12	16	61	No hit	No description
PROSITE profile	PS51294	27.812	62	116	IPR017930	Myb domain
SMART	SM00717	1.2E-17	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	1.8E-17	67	112	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.0E-29	69	117	IPR009057	Homeodomain-like
CDD	cd00167	3.79E-13	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009751	Biological Process	response to salicylic acid
GO:0009753	Biological Process	response to jasmonic acid
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MGRSPCCDEI GLKKGPWTPE EDQKLVKFIQ KHGHGSWRAL PKLAGLNRCG KSCRLRWTNY 60 LRPDIKRGKF TPEEEQTILN LHAILGNKWS AIANHLPGRT DNEIKNFWNT HLKKKLIQMG 120 FDPMTHRPRT DIFSSLPHLI ALANLKELME NNSWEEQAVK LQTEVAKLQY LQYLLQPPTN 180 YPMPNLDMDT LNLLNSLPSA FSTKDFTYNN PDENSPNPFH AIHDHLPDLK TMETSSPNNL 240 ISKDNNNTIN LINHVYHNHQ PPCEFTVLSQ GENSPTSPWL PSSPSPPPIT TAAATTAPLL 300 DGCTTSSAGS FWPDLLLEDS LFHDIP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	3e-30	12	116	5	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250\|UniProtKB:Q9M2D9}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00503	DAP	Transfer from AT5G10280	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by gravity in roots. {ECO:0000269\|PubMed:24902892}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010680536.1	0.0	PREDICTED: transcription factor MYB39
Swissprot	Q9SBF3	1e-111	MYB92_ARATH; Transcription factor MYB92
TrEMBL	A0A068TZV3	1e-137	A0A068TZV3_COFCA; Uncharacterized protein
STRING	XP_010680536.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10280.1	1e-101	myb domain protein 92

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]