PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv6_134740_guat.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family Dof
Protein Properties Length: 274aa    MW: 27717.5 Da    PI: 7.7955
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv6_134740_guat.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof118.91.9e-372585262
              zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                        +++ l+cprC stntkfCyynny+ sqPr+fCk+CrryWt+GG+lr++PvGgg+rk  k+s
  Bv6_134740_guat.t1 25 QHEPLPCPRCSSTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGGSRKTAKRS 85
                        567899**************************************************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-251576IPR003851Zinc finger, Dof-type
PfamPF027011.1E-322883IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.9292983IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103167IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0042545Biological Processcell wall modification
GO:0045787Biological Processpositive regulation of cell cycle
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MSTEAADRRA VRAQQMGAPL PPVEQHEPLP CPRCSSTNTK FCYYNNYNFS QPRHFCKSCR  60
RYWTHGGTLR DIPVGGGSRK TAKRSRTSSS CATSSTTTTT STSSSSHVSI GPILDPIPIS  120
QAQAQAQAQL FLSLPSSTHM GGGGGGGGGG GFTSLLSGGG GGPAGLLALG GFGLGLGLDD  180
VGFGLGRGVW AFPHHEVGGY VNGGGVNHNH NNNENGVSNA GCGGGGGGGG GDETGVSRSD  240
TWHMESGEVV GFVGADCFSS LPELAISTSA NGLK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00402DAPTransfer from AT3G50410Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010680466.10.0PREDICTED: dof zinc finger protein DOF3.4
SwissprotQ9FGD64e-44DOF58_ARATH; Dof zinc finger protein DOF5.8
TrEMBLA0A0K9S2U78e-81A0A0K9S2U7_SPIOL; Uncharacterized protein
STRINGXP_010680466.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50410.11e-34OBF binding protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]