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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Bv6_132240_tzqh.t1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
|
| Family |
C2H2 |
| Protein Properties |
Length: 371aa MW: 39329.8 Da PI: 8.3169 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Bv6_132240_tzqh.t1 | genome | TBVR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 11 | 0.0013 | 36 | 59 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23
+kC+ C+k s+ ++ H H
Bv6_132240_tzqh.t1 36 FKCHVCNKKLSTAGGMVIHVLQvH 59
89************9999987655 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009910 | Biological Process | negative regulation of flower development |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| GO:0046872 | Molecular Function | metal ion binding |
| GO:0046982 | Molecular Function | protein heterodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 371 aa
Download sequence Send
to blast |
MGKKKKRQTE KVFCYYCDRE FDDEKILLQH QKAKHFKCHV CNKKLSTAGG MVIHVLQVHK 60
ENVTKVPNAK PEREATDIEI YGMQGIPPDI LAAHYGETEE DASSKSAKIV PAPNIVGMMP 120
GAVGFAPPAT YGVMQRPMYN PGVPAPLGWH VPRPPPWYPP PPAVSVPSSV SAPPAASVPP 180
QQPLFPVQNI TPPLSAAGAP VSQPPYPPGV HSSPAPIPVS QPLFPVGAAA GMPNQTSAVS 240
APGFPPSMST IPSDIRASAA AYANSPLNVV NNYHIPNGAG AAVNSHSYAS GPNTGGPSIG 300
PPPVIANKAP ANQSAGNEVY LVWDDEAMSM EERRASLPKH QVHDETSQMN SIDAAIDRRI 360
SESRLAGRMA F
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Sequence-specific DNA binding factor that recognizes the 5'-CCAAATTTTAAGTTT-3' sequence. Recruits the FRI-C complex to the FLC promoter. Required for FRI-mediated FLC activation, but has no effect on the expression of MAF1, MAF2, MAF3, MAF5, UFC and CO. Dispensable for the reactivation of FLC in early embryogenesis, but required to maintain high levels of FLC expression in later embryonic and vegetative development. {ECO:0000269|PubMed:17079264, ECO:0000269|PubMed:17138694, ECO:0000269|PubMed:19121105, ECO:0000269|PubMed:21282526}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Not regulated by photoperiod or vernalization. {ECO:0000269|PubMed:17079264, ECO:0000269|PubMed:17138694}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | JQ911666 | 0.0 | JQ911666.1 Beta vulgaris subsp. vulgaris cultivar SBSI-OT7112 SUF4 C2H2-type zinc finger protein mRNA, partial cds. |
