PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Bv5_125390_gcix.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

Dof

Protein Properties

Length: 370aa MW: 40280.9 Da PI: 7.2459

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv5_125390_gcix.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	116.5	1.1e-36	108	168	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtk.GGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+ GG++rnvPvG+grr+nk+ Bv5_125390_gcix.t1 108 PDKILPCPRCNSSDTKFCYFNNYNVNQPRHFCKSCQRYWTAaGGTVRNVPVGAGRRRNKHL 168 68999********************************9549**************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-26	105	166	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.5E-30	110	167	IPR003851	Zinc finger, Dof-type
Gene3D	G3DSA:2.20.25.10	9.5E-4	112	152	No hit	No description
PROSITE profile	PS50884	26.394	112	167	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MSREDMAAVA KDPAIKLFGR TISLPESQFS DESESQDNGS SLMAKPEAEE CRNENSLIMD 60 EVVSTECCKG EQLQSSIKHP IASQATMKPK GHQEDSDGSG EPKPMRRPDK ILPCPRCNSS 120 DTKFCYFNNY NVNQPRHFCK SCQRYWTAAG GTVRNVPVGA GRRRNKHLAS QYRQVIASSD 180 GGPTMMAETT ESTNQLLSCE ESSSSCTGSS PNEMVLKFGP ESPHCDNSTP NLLCGRQSNG 240 CSEIRGINSD VSSQQHLYHY VVPPQTTASD APHSNGSVSL TVPRFAAPNI SYQIVPAAYM 300 NCIPVWVAGS RNISLAVSNN GCVSPPFFSN GSRLQVLGKH SRDTNAVHKG RIEEGISAPK 360 TIKIHELHET

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MSREDMAAVA KDPAIKLFGR TISLPESQFS DESESQDNGS SLMAKPEAEE CRNENSLIMD  60
EVVSTECCKG EQLQSSIKHP IASQATMKPK GHQEDSDGSG EPKPMRRPDK ILPCPRCNSS  120
DTKFCYFNNY NVNQPRHFCK SCQRYWTAAG GTVRNVPVGA GRRRNKHLAS QYRQVIASSD  180
GGPTMMAETT ESTNQLLSCE ESSSSCTGSS PNEMVLKFGP ESPHCDNSTP NLLCGRQSNG  240
CSEIRGINSD VSSQQHLYHY VVPPQTTASD APHSNGSVSL TVPRFAAPNI SYQIVPAAYM  300
NCIPVWVAGS RNISLAVSNN GCVSPPFFSN GSRLQVLGKH SRDTNAVHKG RIEEGISAPK  360
TIKIHELHET

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010695534.1	0.0	PREDICTED: cyclic dof factor 2
TrEMBL	A0A0J8B9K0	0.0	A0A0J8B9K0_BETVU; Uncharacterized protein
STRING	XP_010695534.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62430.1	2e-37	cycling DOF factor 1