PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv5_124790_ktxf.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

C2H2

Protein Properties

Length: 440aa MW: 47736.4 Da PI: 10.058

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv5_124790_ktxf.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.7	8.8e-05	201	223	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 Cp+Cg+ F+ ++L++H+ + H Bv5_124790_ktxf.t1 201 ACPHCGEIFPKIESLEHHQAVrH 223 6******************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	200	223	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	1.92E-21	225	435	No hit	No description
Gene3D	G3DSA:3.90.228.10	6.7E-6	227	342	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain
Gene3D	G3DSA:3.90.228.10	2.2E-4	352	434	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 440 aa Download sequence Send to blast
MNNLLGLIFM GILTFIPPDS TSHTKTTKKQ PQQSTKQRPK QQPKEQPPSK QTPKQKPKSK 60 SKSKQKQPSS WDQIKNLLTC KQVEGSRVHD PSKLGSSCGS MCSFRDVVHG NSRVVHRSDN 120 SSPESSSLGQ DARLLSRNKT GSGTASSRSL SGSVRSGASG TTTHSVSSRG MPLRKLSGCY 180 ECHMIVDPSR YPIIPRTTVC ACPHCGEIFP KIESLEHHQA VRHAVSELGP EDSGRNIVEI 240 IFKSSWLKKD NPICKIERIL KVHNTQRTIQ RFEDCRDMVK LKANNNTKKN PRCAADGNEL 300 LRFHCTTLTC SLGARGSSNL CGSVPGCGVC TIIRHGFQGN KGVRTTASSG RAHDSLDCTD 360 GRRAMLVCRV IAGRVKRSAN DAPAEEEILS LEGPSGGSAA YDSVAGSAGI YSNLEDLAVI 420 NPKAILPCFV VIYKTLTSLT

Sequence ? help Back to Top

Protein Sequence Length: 440 aa Download sequence Send to blast

MNNLLGLIFM GILTFIPPDS TSHTKTTKKQ PQQSTKQRPK QQPKEQPPSK QTPKQKPKSK  60
SKSKQKQPSS WDQIKNLLTC KQVEGSRVHD PSKLGSSCGS MCSFRDVVHG NSRVVHRSDN  120
SSPESSSLGQ DARLLSRNKT GSGTASSRSL SGSVRSGASG TTTHSVSSRG MPLRKLSGCY  180
ECHMIVDPSR YPIIPRTTVC ACPHCGEIFP KIESLEHHQA VRHAVSELGP EDSGRNIVEI  240
IFKSSWLKKD NPICKIERIL KVHNTQRTIQ RFEDCRDMVK LKANNNTKKN PRCAADGNEL  300
LRFHCTTLTC SLGARGSSNL CGSVPGCGVC TIIRHGFQGN KGVRTTASSG RAHDSLDCTD  360
GRRAMLVCRV IAGRVKRSAN DAPAEEEILS LEGPSGGSAA YDSVAGSAGI YSNLEDLAVI  420
NPKAILPCFV VIYKTLTSLT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010695422.1	0.0	PREDICTED: uncharacterized protein LOC104908063
TrEMBL	A0A0J8B8R3	0.0	A0A0J8B8R3_BETVU; Uncharacterized protein
STRING	XP_010695422.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-165	C2H2-like zinc finger protein