PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_122100_ygdi.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family WRKY
Protein Properties Length: 334aa    MW: 36595.5 Da    PI: 6.396
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_122100_ygdi.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.91e-33164221259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dgy+WrKYGqK vk+s+fprsYYrCtsa+C+vkk+vers +dp++v++tYeg+H+h+
  Bv5_122100_ygdi.t1 164 EDGYRWRKYGQKAVKNSPFPRSYYRCTSASCNVKKRVERSYTDPSIVVTTYEGQHTHP 221
                         8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381303.1E-1011334IPR017396PWRKY transcription factor, group IIc
Gene3DG3DSA:2.20.25.803.9E-34148221IPR003657WRKY domain
SuperFamilySSF1182909.55E-29155221IPR003657WRKY domain
PROSITE profilePS5081130.94158223IPR003657WRKY domain
SMARTSM007742.7E-39163222IPR003657WRKY domain
PfamPF031061.0E-26164221IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0009733Biological Processresponse to auxin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MNNSSTTTTT STTTTTTSTT TSTTGFMELL GMQDMININP SLFDMMMMNN GYSGSNNNEV  60
FTNCMDPCAP DPTPPPLSTT SNVNLEASEV LNSNLPTTPN SSSISSASNE GLNDEQQQEE  120
EDEDEDEQQQ KAKKQSTKAK KTNQKRQREP RFAFMTKSEV DHLEDGYRWR KYGQKAVKNS  180
PFPRSYYRCT SASCNVKKRV ERSYTDPSIV VTTYEGQHTH PCTVLPRGAM PSPGFGSGIG  240
IRAGAGAASP FALPMQMANS NHFQMNYISS LVPHQLNHFG NLPSSNTSTN TNNNTNTNTS  300
VVTSCSRLAP VSAALLRDHG LLQDIVPSIM KKEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-261562201074Probable WRKY transcription factor 4
2lex_A6e-261562201074Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00069PBMTransfer from AT2G47260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9840401e-51GU984040.1 Cucumis sativus WRKY protein (WRKY55) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010679416.10.0PREDICTED: probable WRKY transcription factor 23
TrEMBLA0A0K9RLH11e-117A0A0K9RLH1_SPIOL; Uncharacterized protein
STRINGXP_010679416.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.11e-45WRKY DNA-binding protein 23