PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_121510_iogq.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB
Protein Properties Length: 352aa    MW: 39726.9 Da    PI: 5.1599
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_121510_iogq.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.26.9e-171461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rgrWT eEd++l +++++ G g+W++ ++  g+ R++k+c++rw +yl
  Bv5_121510_iogq.t1 14 RGRWTDEEDQKLMKYIEENGEGSWRSMPKNAGLLRCGKSCRLRWINYL 61
                        8*******************************99************97 PP
2Myb_DNA-binding53.84.3e-1767112148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg+ T+eE+e+++++++ +G++ W+ Ia+ ++ gRt++++k++w+++l
  Bv5_121510_iogq.t1  67 RGNITPEEEEIIIKLHATMGNR-WSMIAAQLP-GRTDNEIKNYWNSHL 112
                         7999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.5E-22564IPR009057Homeodomain-like
PROSITE profilePS5129417.53961IPR017930Myb domain
SuperFamilySSF466891.01E-2811108IPR009057Homeodomain-like
SMARTSM007172.0E-121363IPR001005SANT/Myb domain
PfamPF002491.8E-151461IPR001005SANT/Myb domain
CDDcd001678.45E-101661No hitNo description
PROSITE profilePS5129426.49662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-2665116IPR009057Homeodomain-like
SMARTSM007171.7E-1666114IPR001005SANT/Myb domain
PfamPF002498.6E-1567112IPR001005SANT/Myb domain
CDDcd001676.55E-780112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009813Biological Processflavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MGRAPCCEKI GLKRGRWTDE EDQKLMKYIE ENGEGSWRSM PKNAGLLRCG KSCRLRWINY  60
LRSDLRRGNI TPEEEEIIIK LHATMGNRWS MIAAQLPGRT DNEIKNYWNS HLSRKIHTFR  120
RFNGEDNGKI FISLSHTNMP PKRRGGRTSR SAMQRNRNNK TNNNNTNTNT NTTNNNNNNV  180
AKNVIATVGP TIKSNIMGDK NFSIPKNNNN EVMDNQNLMF GHESDLLGIE DIMGLDGLLA  240
TTNENSGIDS DVGVGPNESN GPMEMGPTAE DQEHQSSNSN NTANVSTSTG SNDWEIGTID  300
DVGPDFQLWS EKDQIISWLW ENDDHLEQPI FADLSNNLDA EKEQAMLDWL LS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-25121185110B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00627PBMTransfer from PK06182.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7072380.0KJ707238.1 Beta vulgaris subsp. vulgaris cultivar KWS2320 R2R3-MYB flavonol regulator (MYB12) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001289993.10.0transcription factor MYB12
TrEMBLA0A096ZXF20.0A0A096ZXF2_BETVU; R2R3-MYB flavonol regulator
STRINGXP_010679349.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.11e-77myb domain protein 12