PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_121120_roao.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB
Protein Properties Length: 304aa    MW: 34711.7 Da    PI: 4.8819
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_121120_roao.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.89.2e-171461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd+ll+++++  G  +W++ ++  g+ R++k+c++rw +yl
  Bv5_121120_roao.t1 14 KGPWTPEEDQLLINYIQINGHSNWRALPKQAGLLRCGKSCRLRWTNYL 61
                        79******************************99************97 PP
2Myb_DNA-binding55.81.1e-1767112148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg++T+eE+e +++++++lG++ W++Ia++++ gRt++++k+ w+++l
  Bv5_121120_roao.t1  67 RGNFTQEEEETIIKLHEMLGNR-WSAIAAKLP-GRTDNEIKNVWHTHL 112
                         89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.5E-25564IPR009057Homeodomain-like
PROSITE profilePS5129416.358961IPR017930Myb domain
SuperFamilySSF466891.47E-3010108IPR009057Homeodomain-like
SMARTSM007179.1E-141363IPR001005SANT/Myb domain
PfamPF002491.4E-151461IPR001005SANT/Myb domain
CDDcd001671.65E-101661No hitNo description
PROSITE profilePS5129426.39962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.4E-2765116IPR009057Homeodomain-like
SMARTSM007171.4E-1566114IPR001005SANT/Myb domain
PfamPF002493.9E-1667112IPR001005SANT/Myb domain
CDDcd001673.40E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MGRAPCCEKM GLKKGPWTPE EDQLLINYIQ INGHSNWRAL PKQAGLLRCG KSCRLRWTNY  60
LRPDIKRGNF TQEEEETIIK LHEMLGNRWS AIAAKLPGRT DNEIKNVWHT HLKKRLPKQI  120
EPDQTGSDIA TTDTTVVPTK KRARKSRTTK KGGIHEEAPP RKHMKCMDNL ENDNNNNDNN  180
NNDDDNDPTS SLCDPVSPQP CTSEVSTITS TSASENDNCS KENVGEKDGY IGDFPEINDD  240
FWMEVLSVED TTKSTDDLHC ISPDVLMPEP MRESDPKVHS DDMDFFWYNL LTRSDDLPEF  300
FEML
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-26121165108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010679296.10.0PREDICTED: myb-related protein Myb4
TrEMBLA0A2I4EG802e-89A0A2I4EG80_JUGRE; myb-related protein Myb4-like
STRINGXP_010679296.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.12e-82myb domain protein 14