PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_119990_wdfk.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C2H2
Protein Properties Length: 502aa    MW: 55459.9 Da    PI: 8.9963
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_119990_wdfk.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23e-057799123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        + C++C+k F r  nL+ H r H
  Bv5_119990_wdfk.t1 77 FICEICNKGFQRDQNLQLHRRGH 99
                        89*******************88 PP
2zf-C2H213.90.00016154176123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ykC++C+k +  +s+ k H +t+
  Bv5_119990_wdfk.t1 154 YKCEKCSKIYAVQSDWKAHSKTC 176
                         9******************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.15E-77699No hitNo description
Gene3DG3DSA:3.30.160.601.3E-57699IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121716.0E-57799IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.8457799IPR007087Zinc finger, C2H2
SMARTSM003550.0227799IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807999IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.0E-4142175IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.15E-7149174No hitNo description
SMARTSM0035591154174IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MFQAAMSNSS LSEEASNNFS SFNPLLLQNT TTNIINSTQQ PLLPKKVKKK RSLPGNPDPD  60
AEVIALSPKT LLATNRFICE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRSK TDIVRKKAYV  120
CPESSCVHHH PSRALGDLTG IKKHFCRKHG EKKYKCEKCS KIYAVQSDWK AHSKTCGTRE  180
YRCDCGTLFS RKDSFITHRA FCDALAEESA RLSTNPFSNP MQPPQQPPQF STLSTSQNPN  240
NSSLFPFSTS PWDPPPSQNP NPNPLIHIKT ENNTHFSSPP PFFQPPHIFT NNHSNSKGLL  300
TSLPFTSSDT AAAAAMSTSP FFSATALLQK ATTLGPVSAM LNGFDELGAL SRHEMAAVFP  360
PQPSSSTNTN TTTTTTTTTT SNSDHHDHYS AMLATWRKNN DGLTRDFLGL TAGDYNHNGH  420
HVHVDDDEVV GNMLKFTGGL QYGMTAPYDR DNSSSSSSML MKPHQQHPLV HHHHHQQQID  480
GFGFVGAEHS TTAAAASGSR WG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-36150214367Zinc finger protein JACKDAW
5b3h_F9e-36150214367Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105116KQRSKTDIVRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010679126.10.0PREDICTED: protein indeterminate-domain 12
TrEMBLA0A0K9RK180.0A0A0K9RK18_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010679126.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-105indeterminate(ID)-domain 7