PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_118130_rkdz.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family E2F/DP
Protein Properties Length: 389aa    MW: 42864.7 Da    PI: 8.9653
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_118130_rkdz.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP85.93.1e-2791176271
             E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse...................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                         ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                   d+kn+rRR+YD+lNVL+a+++i+k +k+ei+w+g
  Bv5_118130_rkdz.t1  91 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEyadardasnalgandqqgyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWRG 176
                         689********...*****999**********************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094043.3E-1251389IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.103.2E-4486181IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013724.1E-3390176IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.2E-2492176IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.58E-2093177IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144588.88E-45181284IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440744.71E-42182287No hitNo description
SMARTSM011388.7E-66183351IPR014889Transcription factor DP, C-terminal
PfamPF087813.9E-40184313IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MVTGNSQEDG ERNPKGTTRS WGTAASAQSV STSGSVGSPS SREAGMATPA RDSTVLRLSH  60
LEIHGDDSAS QGAVVSKKKK RGQRATGTDK SGRGLRQFSM KVCEKVESKG RTTYNEVADE  120
LVAEYADARD ASNALGANDQ QGYDEKNIRR RVYDALNVLM AMDIISKDKK EIQWRGLPRT  180
SLNDIEELKI ERVGLRNRIE KKAAYLRELE EQFVGYQNLI QRNQQLYGHG NAPTGGVALP  240
FILVQTRPNA TVEVEISEDM QLVHFDFNST PFELHDDNYV LKQMKFSDKP PFDGRTCNTP  300
PNAGEGPSMT SAYDPQFSQP SSPKPYHNQL SQPPSSPKPF QPKTCTSPSP SNTYQPQMSL  360
PPSRPNTSSN TPTSPPLPGI LKARVQHDR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-3384181193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010678871.10.0PREDICTED: transcription factor-like protein DPB
RefseqXP_019105287.10.0PREDICTED: transcription factor-like protein DPB
SwissprotQ9FNY21e-148DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A0K9RGC00.0A0A0K9RGC0_SPIOL; Uncharacterized protein
STRINGXP_010678871.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-137Transcription factor DP