PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bv5_116210_auzg.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
|
||||||||
Family | E2F/DP | ||||||||
Protein Properties | Length: 372aa MW: 41797 Da PI: 9.5659 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 74.6 | 1e-23 | 21 | 86 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 rk+ksL+ll+++fl+l+++ + + l+++a++L v +rRRiYDi+NVLe+++++++k+kn+++wkg Bv5_116210_auzg.t1 21 RKQKSLGLLCSNFLSLYNRDGVESIGLDDAANKL---GV--ERRRIYDIVNVLESVGVLARKAKNQYTWKG 86 79*****************999************...**..****************************98 PP | |||||||
2 | E2F_TDP | 78.1 | 8.2e-25 | 150 | 230 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 r+eksL+lltq+f+kl+ +s+ + ++l+e+ak L+ + +++k+RR+YDi+NVL++++liek ++k+++rw g Bv5_116210_auzg.t1 150 RREKSLGLLTQNFVKLFICSNVDLISLDEAAKILLGDghnstVMRTKVRRLYDIANVLSSMQLIEKthqteTRKPAFRWLG 230 689**************************************999************************99999******87 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 3.1E-26 | 17 | 87 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 7.78E-16 | 20 | 84 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 5.9E-28 | 21 | 86 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 1.7E-20 | 22 | 86 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 2.0E-23 | 146 | 231 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 3.9E-32 | 150 | 230 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 9.1E-20 | 152 | 230 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 6.61E-14 | 152 | 231 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0032876 | Biological Process | negative regulation of DNA endoreduplication | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 372 aa Download sequence Send to blast |
MATSPPSATD ASGSRHHGYS RKQKSLGLLC SNFLSLYNRD GVESIGLDDA ANKLGVERRR 60 IYDIVNVLES VGVLARKAKN QYTWKGFKGI PKALAALKEE GMRENFGSSG GCSRMKFQVF 120 DYEEDANSNP DTGSQPDVPN SSASSKPDNR REKSLGLLTQ NFVKLFICSN VDLISLDEAA 180 KILLGDGHNS TVMRTKVRRL YDIANVLSSM QLIEKTHQTE TRKPAFRWLG LREGRENTLT 240 SIPIPTESKK RTFGTDVTNI SFKRNKMDFS AGEEAKQLKM KVKTENVESE FYTEQNPRPR 300 SYQYGPFAPV TVAKVGITEQ KNTNRVHDLE SLSSTFRPQY HNQALKDLFD HYVEAWQSWY 360 SEVAGKSVEQ VS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4yo2_A | 5e-44 | 20 | 222 | 3 | 228 | Transcription factor E2F8 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Inhibitor of E2F-dependent activation of gene expression. Binds specifically the E2 recognition site without interacting with DP proteins and prevents transcription activation by E2F/DP heterodimers. Controls the timing of endocycle onset and inhibits endoreduplication. {ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11867638, ECO:0000269|PubMed:15649366, ECO:0000269|PubMed:18787127}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00397 | DAP | Transfer from AT3G48160 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010678680.1 | 0.0 | PREDICTED: E2F transcription factor-like E2FE isoform X2 | ||||
Swissprot | Q8LSZ4 | 1e-133 | E2FE_ARATH; E2F transcription factor-like E2FE | ||||
TrEMBL | A0A0K9R2D5 | 0.0 | A0A0K9R2D5_SPIOL; Uncharacterized protein | ||||
STRING | XP_010678681.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G48160.2 | 1e-136 | DP-E2F-like 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|