PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_111560_tcwd.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB
Protein Properties Length: 552aa    MW: 61010.3 Da    PI: 8.7153
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_111560_tcwd.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding537.8e-1765111148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g WT+eEde l +av  + g++Wk+Ia+ ++  R++ qc +rwqk+l
  Bv5_111560_tcwd.t1  65 KGGWTPEEDETLRNAVSTFKGKSWKKIAEFFP-DRSEVQCLHRWQKVL 111
                         688*****************************.************986 PP
2Myb_DNA-binding62.67.8e-20117163148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g+WT+eEde+++++v+++G+  W+ Ia+ ++ gR +kqc++rw+++l
  Bv5_111560_tcwd.t1 117 KGPWTQEEDEKIIELVARYGPTKWSVIAKSLP-GRIGKQCRERWHNHL 163
                         79******************************.*************97 PP
3Myb_DNA-binding55.11.7e-17169212146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         +++WT eE++ l da++ +G++ W+ Ia+ ++ gRt++ +k++w++
  Bv5_111560_tcwd.t1 169 KDAWTLEEELALMDAHRIYGNK-WAEIAKFLP-GRTDNAIKNHWNS 212
                         679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.55160111IPR017930Myb domain
SMARTSM007171.2E-1464113IPR001005SANT/Myb domain
PfamPF002491.5E-1565111IPR001005SANT/Myb domain
SuperFamilySSF466894.81E-1566121IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-1967116IPR009057Homeodomain-like
CDDcd001674.87E-1368111No hitNo description
PROSITE profilePS5129432.332112167IPR017930Myb domain
SuperFamilySSF466894.4E-32114210IPR009057Homeodomain-like
SMARTSM007171.7E-18116165IPR001005SANT/Myb domain
PfamPF002495.1E-19117163IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-28117166IPR009057Homeodomain-like
CDDcd001671.79E-16119163No hitNo description
Gene3DG3DSA:1.10.10.601.2E-23167218IPR009057Homeodomain-like
SMARTSM007171.9E-16168216IPR001005SANT/Myb domain
PROSITE profilePS5129422.865168218IPR017930Myb domain
PfamPF002492.1E-15169212IPR001005SANT/Myb domain
CDDcd001671.06E-12171214No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MKEMAEGDLK VEECCLENKQ SAAASTSSLV SEGSASVSIK SSGVSSPAAT SPYQRRTTGP  60
IRRAKGGWTP EEDETLRNAV STFKGKSWKK IAEFFPDRSE VQCLHRWQKV LNPELVKGPW  120
TQEEDEKIIE LVARYGPTKW SVIAKSLPGR IGKQCRERWH NHLNPDIKKD AWTLEEELAL  180
MDAHRIYGNK WAEIAKFLPG RTDNAIKNHW NSSLKKKLEF YLATGKLPPV AKNNLQNNAR  240
VTERPTSSGK LMAGSNKESD SSAQTSSCAT DFQKPEDTKT KLDQSSKLQE LGPSSCPADE  300
SADSGVVERS SYIDFRCSNS NYLPLFDRCG SAERAEKNEG VVTPMPHVNS IYGSLYYKPP  360
EDNSCSPSES SIANSSTQPD CSPAPITSQL GFFTPPCVKS NGASVHSTES ILKNAAMTFP  420
NTPSILRKRR AQLQIPHTQN NGKSDEASCK HRCSSSIEQQ SAIHQSGYQE GGLVPTPPSH  480
TSVVTEFCNG KPFNASPPYR LRSKRTAILK SVEKQLEFTE KEKESNATSI DFQFRGNTPI  540
RERISHTKMG VT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-69642185159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-69642185159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
UniProtINDUCTION: Slightly induced by ethylene, auxin (IAA), jasmonic acid (JA) and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010678081.10.0PREDICTED: myb-related protein B
RefseqXP_010678082.10.0PREDICTED: myb-related protein B
SwissprotQ6R0321e-154MB3R5_ARATH; Transcription factor MYB3R-5
SwissprotQ8H1P91e-154MB3R3_ARATH; Transcription factor MYB3R-3
TrEMBLA0A0K9RHV40.0A0A0K9RHV4_SPIOL; Uncharacterized protein
STRINGXP_010678081.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09370.21e-145myb domain protein 3r-3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  3. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]