PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

MYB

Protein Properties

Length: 231aa MW: 26628.5 Da PI: 7.825

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv5_110160_ztyd.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.7	1.1e-17	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++l+++++ +G g W++ ar g++Rt+k+c++rw++yl Bv5_110160_ztyd.t1 15 KGPWTMEEDLILINYIANHGEGVWNSLARSAGLKRTGKSCRLRWLNYL 62 79********************************************97 PP
2	Myb_DNA-binding	55.7	1.1e-17	68	111	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE++l+ ++++++G++ W++Ia++++ gRt++++k++w++ Bv5_110160_ztyd.t1 68 RGNITAEEELLIMELHAKWGNR-WSKIAKHLP-GRTDNEIKNYWRT 111 7999****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.7E-24	7	65	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.096	10	62	IPR017930	Myb domain
SuperFamily	SSF46689	5.24E-30	13	109	IPR009057	Homeodomain-like
SMART	SM00717	1.0E-12	14	64	IPR001005	SANT/Myb domain
Pfam	PF00249	3.8E-16	15	62	IPR001005	SANT/Myb domain
CDD	cd00167	3.16E-10	17	62	No hit	No description
PROSITE profile	PS51294	25.569	63	117	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.8E-25	66	118	IPR009057	Homeodomain-like
SMART	SM00717	1.6E-15	67	115	IPR001005	SANT/Myb domain
Pfam	PF00249	2.5E-16	68	111	IPR001005	SANT/Myb domain
CDD	cd00167	1.11E-12	72	111	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009740	Biological Process	gibberellic acid mediated signaling pathway
GO:0009867	Biological Process	jasmonic acid mediated signaling pathway
GO:0080086	Biological Process	stamen filament development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MEKRQNNSQD NEVRKGPWTM EEDLILINYI ANHGEGVWNS LARSAGLKRT GKSCRLRWLN 60 YLRPDVRRGN ITAEEELLIM ELHAKWGNRW SKIAKHLPGR TDNEIKNYWR TRIQKHLKQA 120 ESSTSTTTTT SRQMSSPDQN NHDQICASQM STASASTPST HYISSSNNQN DPPYLPSISS 180 SSYPHLDHHH QAMEATSYNI VPPQMHPVTN DHFWPTPDED LWAMQLFNSY N

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	5e-25	12	117	24	128	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010677862.1	1e-174	PREDICTED: myb-related protein 305
Swissprot	P81391	7e-86	MYB05_ANTMA; Myb-related protein 305
TrEMBL	A0A0J8CCE7	1e-172	A0A0J8CCE7_BETVU; Uncharacterized protein
STRING	XP_010677862.1	1e-173	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27810.1	1e-75	myb domain protein 21

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]