PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_106800_reui.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family HSF
Protein Properties Length: 510aa    MW: 56524.8 Da    PI: 4.5014
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_106800_reui.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.71e-34341252102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl k+y++++d++++ ++sws ++nsf+v+++ ef +++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+
  Bv5_106800_reui.t1  34 FLCKTYDMVDDPATDAVVSWSCTNNSFIVWNPPEFGRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKH 115
                         9********************888*****************************************999.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++i r+k 
  Bv5_106800_reui.t1 116 LLKTITRRKP 125
                         *******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.7E-3826118IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.4E-6230123IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.98E-3530123IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.9E-3134123IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-193457IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-197284IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407397IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-198597IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:3.50.50.601.8E-4310442IPR023753FAD/NAD(P)-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016491Molecular Functionoxidoreductase activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MDSSTTTTSG AGETSNGGGS APTPMSNVNG PPPFLCKTYD MVDDPATDAV VSWSCTNNSF  60
IVWNPPEFGR DLLPKYFKHN NFSSFVRQLN TYGFRKVDPD RWEFANEGFL RGQKHLLKTI  120
TRRKPAHGNV HQQQQQAHAQ TSSVGACVEV GKFGLEEEVE RLKRDKNVLM QELVRLRQQQ  180
QATDNQLQTM VQRLQGMEQR QQQMMSFLAK AVQSPGFLAQ FVQQQTESSK RISEANKKRR  240
LKQDGVSESD NSNPPDGQIV KYQPSGNDSA QAVLRQLRKL DSNLNSNSDS FYIGDSSSTS  300
VMESKTPANR VSGVTLQEVP PTSGPTHVDP TSEINSGGPG AVVSEIKSSR VITSTESFST  360
PELPELSGLL RPEMLPSATN MQTNVGIPEI SPLPDIVQNS VDTPEGNYML SETADDDFMD  420
LRAATFDGTF PIDIDKLSPD PDIDALLDET SWEQFLDRIP CENIELEMPN VESLTGETEV  480
QPLENGWDKR QRMDQLTEQM GLLNSDNKLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-252512311120Heat shock factor protein 1
5d5u_B2e-251812319129Heat shock factor protein 1
5d5v_B2e-251812319129Heat shock factor protein 1
5d5v_D2e-251812319129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1235242NKKRRLKQ
2236241KKRRLK
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010677345.10.0PREDICTED: heat shock factor protein HSF8
SwissprotQ401521e-172HSF8_SOLLC; Heat shock factor protein HSF8
TrEMBLA0A0K9RJS20.0A0A0K9RJS2_SPIOL; Uncharacterized protein
STRINGXP_010677345.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-130heat shock transcription factor A1D
Publications ? help Back to Top
  1. Zhu B, et al.
    Identification and characterization of a novel heat shock transcription factor gene, GmHsfA1, in soybeans (Glycine max).
    J. Plant Res., 2006. 119(3): p. 247-56
    [PMID:16570125]
  2. Cai SY, et al.
    HsfA1a upregulates melatonin biosynthesis to confer cadmium tolerance in tomato plants.
    J. Pineal Res., 2017.
    [PMID:28095626]
  3. Zhou J, et al.
    Heat Shock Factor HsfA1a Is Essential for R Gene-Mediated Nematode Resistance and Triggers H2O2 Production1.
    Plant Physiol., 2018. 176(3): p. 2456-2471
    [PMID:29339397]